Statistics
Number of enzymes: 1
Total Number of designed primers: 9
Number of PGTM primers: 2
Number of PMTM primers: 7
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103325236 NCBI Gene Symbol: LOC103325236 |
Gene Aliases | |
Gene description & Other designations | Description: GDP-L-galactose phosphorylase 1-like Other designations: GDP-L-galactose phosphorylase 1-like |
Chromosome, Strand & Exon count | Chromosome: LG3 Strand: minus Exon count: 7 |
Gene Location within genomic sequence | Genomic accession No. NC_024128.1 Gene Start and end within genomic accession: 4961555 ...... 4964490 |
CDS Sequence | 103325236 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Compound Repeat sequence: (GAA)3cagagtgtgctag(ATTCT)2 |
Repeat start & end within CDS | Repeat start: 163 Repeat end: 194 |
Forward primer | Primer sequence: TCCACTGTCGTTGCAAGGAA Tm(°C): 59.821 GC (%): 50 Size: 20 |
Reverse primer | Primer sequence: TTCTCCTGCCACCAATGACC Tm(°C): 59.962 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 53 End: 282 Product size (bp): 230 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103325236 NCBI Gene Symbol: LOC103325236 |
Gene Aliases | |
Gene description & Other designations | Description: GDP-L-galactose phosphorylase 1-like Other designations: GDP-L-galactose phosphorylase 1-like |
Chromosome, Strand & Exon count | Chromosome: LG3 Strand: minus Exon count: 7 |
Gene Location within genomic sequence | Genomic accession No. NC_024128.1 Gene Start and end within genomic accession: 4961555 ...... 4964490 |
CDS Sequence | 103325236 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Di Repeat sequence: (AT)4 |
Repeat start & end within CDS | Repeat start: 659 Repeat end: 666 |
Forward primer | Primer sequence: ACGCCAGGAGGAGTTACTCT Tm(°C): 59.96 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TTTGAAGGTAGCAGGCCTGG Tm(°C): 59.962 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 389 End: 687 Product size (bp): 299 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103325236 NCBI Gene Symbol: LOC103325236 |
Gene Aliases | |
Gene description & Other designations | Description: GDP-L-galactose phosphorylase 1-like Other designations: GDP-L-galactose phosphorylase 1-like |
Chromosome, Strand & Exon count | Chromosome: LG3 Strand: minus Exon count: 7 |
Gene Location within genomic sequence | Genomic accession No. NC_024128.1 Gene Start and end within genomic accession: 4961555 ...... 4964490 |
CDS Sequence | 103325236 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Tri Repeat sequence: (ATG)3 |
Repeat start & end within CDS | Repeat start: 814 Repeat end: 822 |
Forward primer | Primer sequence: CCAGGCCTGCTACCTTCAAA Tm(°C): 59.962 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: CCCCACATTCCCAAGCTGAA Tm(°C): 60.252 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 668 End: 969 Product size (bp): 302 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103325236 NCBI Gene Symbol: LOC103325236 |
Gene Aliases | |
Gene description & Other designations | Description: GDP-L-galactose phosphorylase 1-like Other designations: GDP-L-galactose phosphorylase 1-like |
Chromosome, Strand & Exon count | Chromosome: LG3 Strand: minus Exon count: 7 |
Gene Location within genomic sequence | Genomic accession No. NC_024128.1 Gene Start and end within genomic accession: 4961555 ...... 4964490 |
CDS Sequence | 103325236 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Hexa Repeat sequence: (TATTTT)2 |
Repeat start & end within CDS | Repeat start: 905 Repeat end: 916 |
Forward primer | Primer sequence: CCAGGCCTGCTACCTTCAAA Tm(°C): 59.962 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: CCCCACATTCCCAAGCTGAA Tm(°C): 60.252 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 668 End: 969 Product size (bp): 302 |
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|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103325236 NCBI Gene Symbol: LOC103325236 |
Gene Aliases | |
Gene description & Other designations | Description: GDP-L-galactose phosphorylase 1-like Other designations: GDP-L-galactose phosphorylase 1-like |
Chromosome, Strand & Exon count | Chromosome: LG3 Strand: minus Exon count: 7 |
Gene Location within genomic sequence | Genomic accession No. NC_024128.1 Gene Start and end within genomic accession: 4961555 ...... 4964490 |
CDS Sequence | 103325236 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Tri Repeat sequence: (TGA)3 |
Repeat start & end within CDS | Repeat start: 1053 Repeat end: 1061 |
Forward primer | Primer sequence: TTCAGCTTGGGAATGTGGGG Tm(°C): 60.252 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: CAATGGTGCAACAGAGCCG Tm(°C): 59.789 GC (%): 57.895 Size: 19 |
Primer start, end within sequence and product size | Start: 950 End: 1098 Product size (bp): 149 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103325236 NCBI Gene Symbol: LOC103325236 |
Gene Aliases | |
Gene description & Other designations | Description: GDP-L-galactose phosphorylase 1-like Other designations: GDP-L-galactose phosphorylase 1-like |
Chromosome, Strand & Exon count | Chromosome: LG3 Strand: minus Exon count: 7 |
Gene Location within genomic sequence | Genomic accession No. NC_024128.1 Gene Start and end within genomic accession: 4961555 ...... 4964490 |
CDS Sequence | 103325236 |
| Marker Information | |
Marker Type | PGTM |
Repeat type & sequence | Repeat type: Repeat sequence: |
Repeat start & end within CDS | Repeat start: Repeat end: |
Forward primer | Primer sequence: GGTCATTGGTGGCAGGAGAA Tm(°C): 59.962 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TTTGAAGGTAGCAGGCCTGG Tm(°C): 59.962 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 263 End: 687 Product size (bp): 425 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103326528 NCBI Gene Symbol: LOC103326528 |
Gene Aliases | |
Gene description & Other designations | Description: GDP-L-galactose phosphorylase 1 Other designations: GDP-L-galactose phosphorylase 1 |
Chromosome, Strand & Exon count | Chromosome: LG3 Strand: plus Exon count: 7 |
Gene Location within genomic sequence | Genomic accession No. NC_024128.1 Gene Start and end within genomic accession: 14387159 ...... 14390377 |
CDS Sequence | 103326528 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Penta Repeat sequence: (GTCTT)2 |
Repeat start & end within CDS | Repeat start: 845 Repeat end: 854 |
Forward primer | Primer sequence: TTGCTTGCACTTCACATGGC Tm(°C): 59.968 GC (%): 50 Size: 20 |
Reverse primer | Primer sequence: GGCAGGAGAAAGATCCGCTT Tm(°C): 60.107 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 633 End: 979 Product size (bp): 347 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103326528 NCBI Gene Symbol: LOC103326528 |
Gene Aliases | |
Gene description & Other designations | Description: GDP-L-galactose phosphorylase 1 Other designations: GDP-L-galactose phosphorylase 1 |
Chromosome, Strand & Exon count | Chromosome: LG3 Strand: plus Exon count: 7 |
Gene Location within genomic sequence | Genomic accession No. NC_024128.1 Gene Start and end within genomic accession: 14387159 ...... 14390377 |
CDS Sequence | 103326528 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Penta Repeat sequence: (AGAGC)2 |
Repeat start & end within CDS | Repeat start: 1018 Repeat end: 1027 |
Forward primer | Primer sequence: GGTCTTGTCTTCGAGGGTGG Tm(°C): 60.037 GC (%): 60 Size: 20 |
Reverse primer | Primer sequence: TCCCACACAGCTGGATTCAC Tm(°C): 59.963 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 843 End: 1060 Product size (bp): 218 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103326528 NCBI Gene Symbol: LOC103326528 |
Gene Aliases | |
Gene description & Other designations | Description: GDP-L-galactose phosphorylase 1 Other designations: GDP-L-galactose phosphorylase 1 |
Chromosome, Strand & Exon count | Chromosome: LG3 Strand: plus Exon count: 7 |
Gene Location within genomic sequence | Genomic accession No. NC_024128.1 Gene Start and end within genomic accession: 14387159 ...... 14390377 |
CDS Sequence | 103326528 |
| Marker Information | |
Marker Type | PGTM |
Repeat type & sequence | Repeat type: Repeat sequence: |
Repeat start & end within CDS | Repeat start: Repeat end: |
Forward primer | Primer sequence: AATTCGCCCAGTGTTGTTGC Tm(°C): 59.968 GC (%): 50 Size: 20 |
Reverse primer | Primer sequence: GCCATGTGAAGTGCAAGCAA Tm(°C): 59.968 GC (%): 50 Size: 20 |
Primer start, end within sequence and product size | Start: 522 End: 652 Product size (bp): 131 |
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