PlantPathMarks Database

Statistics

Number of enzymes: 1

Total Number of designed primers: 12

Number of PGTM primers: 4

Number of PMTM primers: 8

Number of Failed designed PMTM primers: 1

Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101246099 NCBI Gene Symbol: LOC101246099
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1A Other designations: glycine-rich RNA-binding protein RZ1A
Chromosome, Strand & Exon count	Chromosome: 10 Strand: plus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015447.3 Gene Start and end within genomic accession: 39803954 ...... 39808740
CDS Sequence	101246099
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Compound Repeat sequence: (TCGCAG)2tgatcgtgaatatggaggtgggcggggatc(TGG)3
Repeat start & end within CDS	Repeat start: 324 Repeat end: 374
Forward primer	Primer sequence: CGTGACAGAGATCGAGGTCG Tm(°C): 59.973 GC (%): 60 Size: 20
Reverse primer	Primer sequence: CCGCCACCACCATACCTATC Tm(°C): 59.965 GC (%): 60 Size: 20
Primer start, end within sequence and product size	Start: 300 End: 481 Product size (bp): 182
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101246099 NCBI Gene Symbol: LOC101246099
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1A Other designations: glycine-rich RNA-binding protein RZ1A
Chromosome, Strand & Exon count	Chromosome: 10 Strand: plus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015447.3 Gene Start and end within genomic accession: 39803954 ...... 39808740
CDS Sequence	101246099
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Compound Repeat sequence: (TGG)3cgga(GGT)3
Repeat start & end within CDS	Repeat start: 471 Repeat end: 492
Forward primer	Primer sequence: CGTGACAGAGATCGAGGTCG Tm(°C): 59.973 GC (%): 60 Size: 20
Reverse primer	Primer sequence: TATGGCCCTGAACGATCACG Tm(°C): 59.896 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 300 End: 610 Product size (bp): 311
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101246099 NCBI Gene Symbol: LOC101246099
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1A Other designations: glycine-rich RNA-binding protein RZ1A
Chromosome, Strand & Exon count	Chromosome: 10 Strand: plus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015447.3 Gene Start and end within genomic accession: 39803954 ...... 39808740
CDS Sequence	101246099
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Tri Repeat sequence: (GCA)3
Repeat start & end within CDS	Repeat start: 545 Repeat end: 553
Forward primer	Primer sequence: CGTGACAGAGATCGAGGTCG Tm(°C): 59.973 GC (%): 60 Size: 20
Reverse primer	Primer sequence: TATGGCCCTGAACGATCACG Tm(°C): 59.896 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 300 End: 610 Product size (bp): 311
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101246099 NCBI Gene Symbol: LOC101246099
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1A Other designations: glycine-rich RNA-binding protein RZ1A
Chromosome, Strand & Exon count	Chromosome: 10 Strand: plus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015447.3 Gene Start and end within genomic accession: 39803954 ...... 39808740
CDS Sequence	101246099
	Marker Information
Marker Type	PGTM
Repeat type & sequence	Repeat type: Repeat sequence:
Repeat start & end within CDS	Repeat start: Repeat end:
Forward primer	Primer sequence: GAGGATGACGAGTACCGCTG Tm(°C): 59.97 GC (%): 60 Size: 20
Reverse primer	Primer sequence: CGACCTCGATCTCTGTCACG Tm(°C): 59.973 GC (%): 60 Size: 20
Primer start, end within sequence and product size	Start: 6 End: 319 Product size (bp): 314
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101263853 NCBI Gene Symbol: LOC101263853
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1A Other designations: glycine-rich RNA-binding protein RZ1A
Chromosome, Strand & Exon count	Chromosome: 1 Strand: minus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015438.3 Gene Start and end within genomic accession: 93064954 ...... 93068503
CDS Sequence	101263853
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Penta Repeat sequence: (GAATG)2
Repeat start & end within CDS	Repeat start: 204 Repeat end: 213
Forward primer	Primer sequence: GAGAGCGATGGAAGATGCCA Tm(°C): 59.894 GC (%): 55 Size: 20
Reverse primer	Primer sequence: TCTGCCTGAACCTTGCTGAG Tm(°C): 59.964 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 173 End: 272 Product size (bp): 100
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101263853 NCBI Gene Symbol: LOC101263853
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1A Other designations: glycine-rich RNA-binding protein RZ1A
Chromosome, Strand & Exon count	Chromosome: 1 Strand: minus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015438.3 Gene Start and end within genomic accession: 93064954 ...... 93068503
CDS Sequence	101263853
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Compound Repeat sequence: (CCGTGA)2ccgagatcggggtcgtgac(CGTGAT)2cggggtagccgtgatta( TGG)3tcggggagc(TGG)5
Repeat start & end within CDS	Repeat start: 294 Repeat end: 386
Forward primer	Primer sequence: CAGCAAGGTTCAGGCAGAGA Tm(°C): 59.964 GC (%): 55 Size: 20
Reverse primer	Primer sequence: GGTCCAGAACGATCACGGTT Tm(°C): 60.038 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 255 End: 571 Product size (bp): 317
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101263853 NCBI Gene Symbol: LOC101263853
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1A Other designations: glycine-rich RNA-binding protein RZ1A
Chromosome, Strand & Exon count	Chromosome: 1 Strand: minus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015438.3 Gene Start and end within genomic accession: 93064954 ...... 93068503
CDS Sequence	101263853
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Compound Repeat sequence: (TGG)3(GGTGGA)2*cctgacaggaacggagatcgatatggaagcc(GCA)3ga ga(TGG)3
Repeat start & end within CDS	Repeat start: 462 Repeat end: 530
Forward primer	Primer sequence: CAGCAAGGTTCAGGCAGAGA Tm(°C): 59.964 GC (%): 55 Size: 20
Reverse primer	Primer sequence: GGTCCAGAACGATCACGGTT Tm(°C): 60.038 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 255 End: 571 Product size (bp): 317
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101263853 NCBI Gene Symbol: LOC101263853
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1A Other designations: glycine-rich RNA-binding protein RZ1A
Chromosome, Strand & Exon count	Chromosome: 1 Strand: minus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015438.3 Gene Start and end within genomic accession: 93064954 ...... 93068503
CDS Sequence	101263853
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Tri Repeat sequence: (GGA)3
Repeat start & end within CDS	Repeat start: 6 Repeat end: 14
Forward primer	Primer sequence: None Tm(°C): GC (%): Size:
Reverse primer	Primer sequence: None Tm(°C): GC (%): Size:
Primer start, end within sequence and product size	Start: End: Product size (bp):
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101263853 NCBI Gene Symbol: LOC101263853
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1A Other designations: glycine-rich RNA-binding protein RZ1A
Chromosome, Strand & Exon count	Chromosome: 1 Strand: minus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015438.3 Gene Start and end within genomic accession: 93064954 ...... 93068503
CDS Sequence	101263853
	Marker Information
Marker Type	PGTM
Repeat type & sequence	Repeat type: Repeat sequence:
Repeat start & end within CDS	Repeat start: Repeat end:
Forward primer	Primer sequence: CAGCAAGGTTCAGGCAGAGA Tm(°C): 59.964 GC (%): 55 Size: 20
Reverse primer	Primer sequence: GGTCCAGAACGATCACGGTT Tm(°C): 60.038 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 255 End: 571 Product size (bp): 317
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101265498 NCBI Gene Symbol: LOC101265498
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1C Other designations: glycine-rich RNA-binding protein RZ1C\|glycine-rich RNA-binding protein GRP1A
Chromosome, Strand & Exon count	Chromosome: 11 Strand: minus Exon count: 6
Gene Location within genomic sequence	Genomic accession No. NC_015448.3 Gene Start and end within genomic accession: 2453685 ...... 2459429
CDS Sequence	101265498
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Compound Repeat sequence: (TGG)3tgacaggggtagtta(TGG)3tgacaggggtaggtac(GGT)5ggccgt ggtagctac(GGT)3
Repeat start & end within CDS	Repeat start: 351 Repeat end: 438
Forward primer	Primer sequence: ACAGAGACAGTGACAGGGGT Tm(°C): 60.105 GC (%): 55 Size: 20
Reverse primer	Primer sequence: GACGGTCACTGCCATAACGA Tm(°C): 60.109 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 325 End: 606 Product size (bp): 282
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101265498 NCBI Gene Symbol: LOC101265498
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1C Other designations: glycine-rich RNA-binding protein RZ1C\|glycine-rich RNA-binding protein GRP1A
Chromosome, Strand & Exon count	Chromosome: 11 Strand: minus Exon count: 6
Gene Location within genomic sequence	Genomic accession No. NC_015448.3 Gene Start and end within genomic accession: 2453685 ...... 2459429
CDS Sequence	101265498
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Tri Repeat sequence: (GGA)3
Repeat start & end within CDS	Repeat start: 913 Repeat end: 921
Forward primer	Primer sequence: GAAGCCGTGATCGATTTGCC Tm(°C): 59.972 GC (%): 55 Size: 20
Reverse primer	Primer sequence: AATAACGGTCAAAGGCAGCG Tm(°C): 59.198 GC (%): 50 Size: 20
Primer start, end within sequence and product size	Start: 682 End: 951 Product size (bp): 270
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101265498 NCBI Gene Symbol: LOC101265498
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1C Other designations: glycine-rich RNA-binding protein RZ1C\|glycine-rich RNA-binding protein GRP1A
Chromosome, Strand & Exon count	Chromosome: 11 Strand: minus Exon count: 6
Gene Location within genomic sequence	Genomic accession No. NC_015448.3 Gene Start and end within genomic accession: 2453685 ...... 2459429
CDS Sequence	101265498
	Marker Information
Marker Type	PGTM
Repeat type & sequence	Repeat type: Repeat sequence:
Repeat start & end within CDS	Repeat start: Repeat end:
Forward primer	Primer sequence: GAAGCCGTGATCGATTTGCC Tm(°C): 59.972 GC (%): 55 Size: 20
Reverse primer	Primer sequence: CCTCTCTTTGCCTGAACCGT Tm(°C): 59.965 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 682 End: 794 Product size (bp): 113
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Enzyme Id: K12885
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101261205 NCBI Gene Symbol: LOC101261205
Gene Aliases
Gene description & Other designations	Description: glycine-rich RNA-binding protein RZ1C-like Other designations: glycine-rich RNA-binding protein RZ1C-like
Chromosome, Strand & Exon count	Chromosome: 3 Strand: plus Exon count: 4
Gene Location within genomic sequence	Genomic accession No. NC_015440.3 Gene Start and end within genomic accession: 20322607 ...... 20330100
CDS Sequence	101261205
	Marker Information
Marker Type	PGTM
Repeat type & sequence	Repeat type: Repeat sequence:
Repeat start & end within CDS	Repeat start: Repeat end:
Forward primer	Primer sequence: ATGGATGGTGCAGAGGTTGG Tm(°C): 60.034 GC (%): 55 Size: 20
Reverse primer	Primer sequence: GCAAGTGTCTTGCCCAACTG Tm(°C): 59.969 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 204 End: 362 Product size (bp): 159
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