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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101255099 NCBI Gene Symbol: LOC101255099 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16 Other designations: protein RDM16|U4/U6 small nuclear ribonucleoprotein Prp3 |
Chromosome, Strand & Exon count | Chromosome: 5 Strand: plus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015442.3 Gene Start and end within genomic accession: 65520331 ...... 65525115 |
CDS Sequence | 101255099 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Compound Repeat sequence: (GCT)3gttaagaaagaagacgatgac(GAAGAT)2aagcctctcaacaa(GT)4 |
Repeat start & end within CDS | Repeat start: 2344 Repeat end: 2407 |
Forward primer | Primer sequence: GGTGTGCGGTTATCTTGGGA Tm(°C): 60.036 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TCAGTCCTGCACTCGTGAAC Tm(°C): 59.968 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 2242 End: 2473 Product size (bp): 232 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101255099 NCBI Gene Symbol: LOC101255099 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16 Other designations: protein RDM16|U4/U6 small nuclear ribonucleoprotein Prp3 |
Chromosome, Strand & Exon count | Chromosome: 5 Strand: plus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015442.3 Gene Start and end within genomic accession: 65520331 ...... 65525115 |
CDS Sequence | 101255099 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Tri Repeat sequence: (GCT)3 |
Repeat start & end within CDS | Repeat start: 2476 Repeat end: 2484 |
Forward primer | Primer sequence: GGTGTGCGGTTATCTTGGGA Tm(°C): 60.036 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: AACCCCAGCATCAGCAAAGA Tm(°C): 59.887 GC (%): 50 Size: 20 |
Primer start, end within sequence and product size | Start: 2242 End: 2510 Product size (bp): 269 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101255099 NCBI Gene Symbol: LOC101255099 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16 Other designations: protein RDM16|U4/U6 small nuclear ribonucleoprotein Prp3 |
Chromosome, Strand & Exon count | Chromosome: 5 Strand: plus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015442.3 Gene Start and end within genomic accession: 65520331 ...... 65525115 |
CDS Sequence | 101255099 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Compound Repeat sequence: (GA)4aaaatcgagtaagagagaaagaggatccagggacgg(CGA)4 |
Repeat start & end within CDS | Repeat start: 4 Repeat end: 59 |
Forward primer | Primer sequence: None Tm(°C): GC (%): Size: |
Reverse primer | Primer sequence: None Tm(°C): GC (%): Size: |
Primer start, end within sequence and product size | Start: End: Product size (bp): |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101255099 NCBI Gene Symbol: LOC101255099 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16 Other designations: protein RDM16|U4/U6 small nuclear ribonucleoprotein Prp3 |
Chromosome, Strand & Exon count | Chromosome: 5 Strand: plus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015442.3 Gene Start and end within genomic accession: 65520331 ...... 65525115 |
CDS Sequence | 101255099 |
| Marker Information | |
Marker Type | PGTM |
Repeat type & sequence | Repeat type: Repeat sequence: |
Repeat start & end within CDS | Repeat start: Repeat end: |
Forward primer | Primer sequence: CACGATCGCGAGGATGAGAA Tm(°C): 59.971 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: CCTGTCCATCGTCATAGGGC Tm(°C): 59.966 GC (%): 60 Size: 20 |
Primer start, end within sequence and product size | Start: 162 End: 561 Product size (bp): 400 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Compound Repeat sequence: (TCA)3ccatcgttccaagcatcggtcggaagacggacatcaccgatct(GA)4 |
Repeat start & end within CDS | Repeat start: 84 Repeat end: 143 |
Forward primer | Primer sequence: CAAACACCGCAGTTCCAAGG Tm(°C): 59.969 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: CCTACCATTGTCGTCCTCGG Tm(°C): 59.898 GC (%): 60 Size: 20 |
Primer start, end within sequence and product size | Start: 38 End: 308 Product size (bp): 271 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Compound Repeat sequence: (GAT)3ggagattggagggataaggatgagg(AGAGA)2gaaaaggaggtttgag
ggtaaagcaa(AGG)4 |
Repeat start & end within CDS | Repeat start: 322 Repeat end: 403 |
Forward primer | Primer sequence: CGAGGACGACAATGGTAGGG Tm(°C): 59.898 GC (%): 60 Size: 20 |
Reverse primer | Primer sequence: GCAATGGAACCAACAGCCTG Tm(°C): 60.038 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 290 End: 505 Product size (bp): 216 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Hexa Repeat sequence: (AGCAAA)2 |
Repeat start & end within CDS | Repeat start: 729 Repeat end: 740 |
Forward primer | Primer sequence: CAGGCTGTTGGTTCCATTGC Tm(°C): 60.038 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TGGCCTTTTGAGTCCACTCC Tm(°C): 59.89 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 486 End: 780 Product size (bp): 295 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Hexa Repeat sequence: (AACAAG)2 |
Repeat start & end within CDS | Repeat start: 799 Repeat end: 810 |
Forward primer | Primer sequence: CTGGCAAGAGTGGGAGCTTA Tm(°C): 59.385 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TTTTGAGCTGTGAGCCCCTT Tm(°C): 59.814 GC (%): 50 Size: 20 |
Primer start, end within sequence and product size | Start: 694 End: 1006 Product size (bp): 313 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Penta Repeat sequence: (GTAAT)2 |
Repeat start & end within CDS | Repeat start: 1637 Repeat end: 1646 |
Forward primer | Primer sequence: CAAGCACAGTTGACCAAGGC Tm(°C): 59.969 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TGGCCAATCTTCGCTGAGTT Tm(°C): 59.963 GC (%): 50 Size: 20 |
Primer start, end within sequence and product size | Start: 1470 End: 1797 Product size (bp): 328 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Tri Repeat sequence: (TGT)4 |
Repeat start & end within CDS | Repeat start: 2178 Repeat end: 2189 |
Forward primer | Primer sequence: TGACTGGGTGTGCAGTGATC Tm(°C): 59.965 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TGCCAGACCAACACACACTT Tm(°C): 60.035 GC (%): 50 Size: 20 |
Primer start, end within sequence and product size | Start: 2143 End: 2338 Product size (bp): 196 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Compound Repeat sequence: (TGAAGG)3(TGAAGA)2taagcctctcaacaa(GT)4 |
Repeat start & end within CDS | Repeat start: 2277 Repeat end: 2329 |
Forward primer | Primer sequence: TGACTGGGTGTGCAGTGATC Tm(°C): 59.965 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: AACTTTACGAGCAGCAGCCT Tm(°C): 59.965 GC (%): 50 Size: 20 |
Primer start, end within sequence and product size | Start: 2143 End: 2414 Product size (bp): 272 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Tri Repeat sequence: (GCT)3 |
Repeat start & end within CDS | Repeat start: 2398 Repeat end: 2406 |
Forward primer | Primer sequence: AGTGTGTGTTGGTCTGGCAA Tm(°C): 60.035 GC (%): 50 Size: 20 |
Reverse primer | Primer sequence: ACCCCAGCATCAGCAAAAAC Tm(°C): 59.319 GC (%): 50 Size: 20 |
Primer start, end within sequence and product size | Start: 2320 End: 2431 Product size (bp): 112 |
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| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Hexa Repeat sequence: (GAGAAA)2 |
Repeat start & end within CDS | Repeat start: 7 Repeat end: 18 |
Forward primer | Primer sequence: None Tm(°C): GC (%): Size: |
Reverse primer | Primer sequence: None Tm(°C): GC (%): Size: |
Primer start, end within sequence and product size | Start: End: Product size (bp): |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 101258563 NCBI Gene Symbol: LOC101258563 |
Gene Aliases | |
Gene description & Other designations | Description: protein RDM16-like Other designations: protein RDM16-like |
Chromosome, Strand & Exon count | Chromosome: 6 Strand: minus Exon count: 6 |
Gene Location within genomic sequence | Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 26773771 ...... 26786689 |
CDS Sequence | 101258563 |
| Marker Information | |
Marker Type | PGTM |
Repeat type & sequence | Repeat type: Repeat sequence: |
Repeat start & end within CDS | Repeat start: Repeat end: |
Forward primer | Primer sequence: CAAGCACAGTTGACCAAGGC Tm(°C): 59.969 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: CATCCCACCACTCAACGTCA Tm(°C): 59.965 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 1470 End: 1593 Product size (bp): 124 |
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