PlantPathMarks Database

Statistics

Number of enzymes: 1

Total Number of designed primers: 13

Number of PGTM primers: 2

Number of PMTM primers: 11

Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101252328 NCBI Gene Symbol: LOC101252328
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 9 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015446.3 Gene Start and end within genomic accession: 65527753 ...... 65534132
CDS Sequence	101252328
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Hexa Repeat sequence: (TTGGAA)2
Repeat start & end within CDS	Repeat start: 52 Repeat end: 63
Forward primer	Primer sequence: ATGGCTACCGCATCAGGTG Tm(°C): 59.853 GC (%): 57.895 Size: 19
Reverse primer	Primer sequence: GGTACCAAGGAGCGGAAGAC Tm(°C): 60.108 GC (%): 60 Size: 20
Primer start, end within sequence and product size	Start: 0 End: 162 Product size (bp): 163
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101252328 NCBI Gene Symbol: LOC101252328
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 9 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015446.3 Gene Start and end within genomic accession: 65527753 ...... 65534132
CDS Sequence	101252328
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Penta Repeat sequence: (CGAAG)2
Repeat start & end within CDS	Repeat start: 615 Repeat end: 624
Forward primer	Primer sequence: GGGAGCAAAATGGACAGGGA Tm(°C): 59.96 GC (%): 55 Size: 20
Reverse primer	Primer sequence: CGCACACGCTTCTCAACTTT Tm(°C): 59.695 GC (%): 50 Size: 20
Primer start, end within sequence and product size	Start: 347 End: 673 Product size (bp): 327
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101252328 NCBI Gene Symbol: LOC101252328
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 9 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015446.3 Gene Start and end within genomic accession: 65527753 ...... 65534132
CDS Sequence	101252328
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Tri Repeat sequence: (TGG)3
Repeat start & end within CDS	Repeat start: 681 Repeat end: 689
Forward primer	Primer sequence: TGCCCACGTCATTGAACGAT Tm(°C): 60.321 GC (%): 50 Size: 20
Reverse primer	Primer sequence: CCGTATCCTCCCGAATACGC Tm(°C): 60.109 GC (%): 60 Size: 20
Primer start, end within sequence and product size	Start: 458 End: 732 Product size (bp): 275
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101252328 NCBI Gene Symbol: LOC101252328
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 9 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015446.3 Gene Start and end within genomic accession: 65527753 ...... 65534132
CDS Sequence	101252328
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Penta Repeat sequence: (ACCAC)2
Repeat start & end within CDS	Repeat start: 1193 Repeat end: 1202
Forward primer	Primer sequence: GGCAATGCAGCTAGTGAGGA Tm(°C): 60.108 GC (%): 55 Size: 20
Reverse primer	Primer sequence: GCTTCAATTCCAGCAGCACC Tm(°C): 60.109 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 1041 End: 1300 Product size (bp): 260
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101252328 NCBI Gene Symbol: LOC101252328
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 9 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015446.3 Gene Start and end within genomic accession: 65527753 ...... 65534132
CDS Sequence	101252328
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Compound Repeat sequence: (AGAGG)2agac(GAGAA)2
Repeat start & end within CDS	Repeat start: 1467 Repeat end: 1490
Forward primer	Primer sequence: GGTGCTGCTGGAATTGAAGC Tm(°C): 60.109 GC (%): 55 Size: 20
Reverse primer	Primer sequence: TCTTGGTGAACCCGCTTCAT Tm(°C): 59.6 GC (%): 50 Size: 20
Primer start, end within sequence and product size	Start: 1281 End: 1582 Product size (bp): 302
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101252328 NCBI Gene Symbol: LOC101252328
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 9 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015446.3 Gene Start and end within genomic accession: 65527753 ...... 65534132
CDS Sequence	101252328
	Marker Information
Marker Type	PGTM
Repeat type & sequence	Repeat type: Repeat sequence:
Repeat start & end within CDS	Repeat start: Repeat end:
Forward primer	Primer sequence: AGAAAGGCTGGTCTTGCTCC Tm(°C): 59.963 GC (%): 55 Size: 20
Reverse primer	Primer sequence: TCCCTGTCCATTTTGCTCCC Tm(°C): 59.96 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 69 End: 366 Product size (bp): 298
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101260949 NCBI Gene Symbol: LOC101260949
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 6 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 49226048 ...... 49231900
CDS Sequence	101260949
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Hexa Repeat sequence: (GGAAAT)2
Repeat start & end within CDS	Repeat start: 197 Repeat end: 208
Forward primer	Primer sequence: GGGAGGACCACAGGAAACAG Tm(°C): 59.963 GC (%): 60 Size: 20
Reverse primer	Primer sequence: TCCTAATTTGCGTGGCCTGT Tm(°C): 59.962 GC (%): 50 Size: 20
Primer start, end within sequence and product size	Start: 31 End: 350 Product size (bp): 320
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101260949 NCBI Gene Symbol: LOC101260949
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 6 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 49226048 ...... 49231900
CDS Sequence	101260949
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Hexa Repeat sequence: (GAAGAT)2
Repeat start & end within CDS	Repeat start: 580 Repeat end: 591
Forward primer	Primer sequence: TGGCTACGATGCTGCTTCTT Tm(°C): 59.75 GC (%): 50 Size: 20
Reverse primer	Primer sequence: AGTTCCTGTGCTTCCACCAC Tm(°C): 60.179 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 437 End: 701 Product size (bp): 265
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101260949 NCBI Gene Symbol: LOC101260949
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 6 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 49226048 ...... 49231900
CDS Sequence	101260949
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Tri Repeat sequence: (TGG)3
Repeat start & end within CDS	Repeat start: 681 Repeat end: 689
Forward primer	Primer sequence: TGAGAAGCGTGTACGAACCA Tm(°C): 59.33 GC (%): 50 Size: 20
Reverse primer	Primer sequence: GGACCGGGTTTTGGGATCAT Tm(°C): 60.034 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 659 End: 791 Product size (bp): 133
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101260949 NCBI Gene Symbol: LOC101260949
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 6 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 49226048 ...... 49231900
CDS Sequence	101260949
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Di Repeat sequence: (GA)4
Repeat start & end within CDS	Repeat start: 1096 Repeat end: 1103
Forward primer	Primer sequence: GCTCCATCCCAAGCAGAACT Tm(°C): 60.035 GC (%): 55 Size: 20
Reverse primer	Primer sequence: TTCCAGCAGCACCTGTACAG Tm(°C): 59.965 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 948 End: 1293 Product size (bp): 346
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101260949 NCBI Gene Symbol: LOC101260949
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 6 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 49226048 ...... 49231900
CDS Sequence	101260949
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Penta Repeat sequence: (ACCAC)2
Repeat start & end within CDS	Repeat start: 1193 Repeat end: 1202
Forward primer	Primer sequence: GCTCCATCCCAAGCAGAACT Tm(°C): 60.035 GC (%): 55 Size: 20
Reverse primer	Primer sequence: TTCCAGCAGCACCTGTACAG Tm(°C): 59.965 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 948 End: 1293 Product size (bp): 346
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101260949 NCBI Gene Symbol: LOC101260949
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 6 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 49226048 ...... 49231900
CDS Sequence	101260949
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Compound Repeat sequence: (AGAGA)2gggatg(AAAGGA)2
Repeat start & end within CDS	Repeat start: 1480 Repeat end: 1507
Forward primer	Primer sequence: GGCCAATATTGCTCGCAAGG Tm(°C): 59.969 GC (%): 55 Size: 20
Reverse primer	Primer sequence: AGCCTCCATTTCTTCCGGTG Tm(°C): 60.035 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 1328 End: 1556 Product size (bp): 229
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Enzyme Id: K12819
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101260949 NCBI Gene Symbol: LOC101260949
Gene Aliases
Gene description & Other designations	Description: pre-mRNA-splicing factor SLU7 Other designations: pre-mRNA-splicing factor SLU7
Chromosome, Strand & Exon count	Chromosome: 6 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015443.3 Gene Start and end within genomic accession: 49226048 ...... 49231900
CDS Sequence	101260949
	Marker Information
Marker Type	PGTM
Repeat type & sequence	Repeat type: Repeat sequence:
Repeat start & end within CDS	Repeat start: Repeat end:
Forward primer	Primer sequence: GCTCCATCCCAAGCAGAACT Tm(°C): 60.035 GC (%): 55 Size: 20
Reverse primer	Primer sequence: CCTTGCGAGCAATATTGGCC Tm(°C): 59.969 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 948 End: 1347 Product size (bp): 400
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