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Statistics

Number of enzymes: 1
Total Number of designed primers: 55
Number of PGTM primers:     6
Number of PMTM primers:     49

Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (AAACG)2
Repeat start & end within CDS Repeat start: 379     Repeat end: 388
Forward primer Primer sequence:   AATTACCGTTTGCCCCTCGT     Tm(°C): 59.963     GC (%): 50     Size: 20
Reverse primer Primer sequence:   TCGCGCAACAATTCCAACTT     Tm(°C): 59.334     GC (%): 45     Size: 20
Primer start, end within sequence and product size Start: 226     End: 517     Product size (bp): 292
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (TGA)3
Repeat start & end within CDS Repeat start: 758     Repeat end: 766
Forward primer Primer sequence:   GAGGGTGGTTCAAGGGTGTT     Tm(°C): 59.815     GC (%): 55     Size: 20
Reverse primer Primer sequence:   CCGAGGCTGAGTGCAAACTA     Tm(°C): 60.037     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 696     End: 956     Product size (bp): 261
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (CAGCT)2
Repeat start & end within CDS Repeat start: 1268     Repeat end: 1277
Forward primer Primer sequence:   GCTGCGAATTCTTTGGCACA     Tm(°C): 60.039     GC (%): 50     Size: 20
Reverse primer Primer sequence:   GGAATGTTCCGCAGCCAAAG     Tm(°C): 60.109     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 963     End: 1308     Product size (bp): 346
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (GAGGGA)2
Repeat start & end within CDS Repeat start: 1441     Repeat end: 1452
Forward primer Primer sequence:   CTTTGGCTGCGGAACATTCC     Tm(°C): 60.109     GC (%): 55     Size: 20
Reverse primer Primer sequence:   TCACACAAGCCCACTCAACT     Tm(°C): 59.454     GC (%): 50     Size: 20
Primer start, end within sequence and product size Start: 1289     End: 1503     Product size (bp): 215
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (CTTTAC)2
Repeat start & end within CDS Repeat start: 1529     Repeat end: 1540
Forward primer Primer sequence:   TGAGTGGGCTTGTGTGAAGT     Tm(°C): 59.454     GC (%): 50     Size: 20
Reverse primer Primer sequence:   TTCCTGGTCCAGTTCTCCCA     Tm(°C): 60.105     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1487     End: 1791     Product size (bp): 305
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (TCA)3
Repeat start & end within CDS Repeat start: 1836     Repeat end: 1844
Forward primer Primer sequence:   TGGGAGAACTGGACCAGGAA     Tm(°C): 60.105     GC (%): 55     Size: 20
Reverse primer Primer sequence:   TCAGCACTGCAACACCAAGA     Tm(°C): 60.107     GC (%): 50     Size: 20
Primer start, end within sequence and product size Start: 1772     End: 1887     Product size (bp): 116
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (TGATTT)2
Repeat start & end within CDS Repeat start: 1920     Repeat end: 1931
Forward primer Primer sequence:   TGGGAGAACTGGACCAGGAA     Tm(°C): 60.105     GC (%): 55     Size: 20
Reverse primer Primer sequence:   TTAGGGCTAGGTGCGTCAAC     Tm(°C): 59.752     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1772     End: 1951     Product size (bp): 180
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (ACTTT)2
Repeat start & end within CDS Repeat start: 2245     Repeat end: 2254
Forward primer Primer sequence:   TCCGATTGCTTGAAGGTGCA     Tm(°C): 60.251     GC (%): 50     Size: 20
Reverse primer Primer sequence:   GCACAGTCTCCTGGCATCTT     Tm(°C): 60.036     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 2196     End: 2358     Product size (bp): 163
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (GTGCA)2
Repeat start & end within CDS Repeat start: 3176     Repeat end: 3185
Forward primer Primer sequence:   TCCTTGGAGCTGGTGCAATT     Tm(°C): 59.887     GC (%): 50     Size: 20
Reverse primer Primer sequence:   ATTGTCGTGGCCAGTACCTG     Tm(°C): 60.036     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 3034     End: 3212     Product size (bp): 179
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Compound     Repeat sequence: (AAGAT)2gtcagcaacagttccacagctctgtt(TCCTG)2
Repeat start & end within CDS Repeat start: 3871     Repeat end: 3916
Forward primer Primer sequence:   CTGGATGTCTTCCCTGGCAG     Tm(°C): 60.107     GC (%): 60     Size: 20
Reverse primer Primer sequence:   ATGGCCTTCTCAGTTCTGCC     Tm(°C): 60.035     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 3850     End: 4077     Product size (bp): 228
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (AGGGA)2
Repeat start & end within CDS Repeat start: 4153     Repeat end: 4162
Forward primer Primer sequence:   ACTGAGAAGGCCATTGGAGC     Tm(°C): 60.035     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GAGGCAAAAGTCCTCCACGA     Tm(°C): 59.965     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 4064     End: 4350     Product size (bp): 287
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (CCCCT)2
Repeat start & end within CDS Repeat start: 4827     Repeat end: 4836
Forward primer Primer sequence:   CAATCAGAAGCCGGGAAGGT     Tm(°C): 60.035     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GTGCACCAGCTTCTCCTGAT     Tm(°C): 60.036     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 4657     End: 4884     Product size (bp): 228
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (CAG)3
Repeat start & end within CDS Repeat start: 5136     Repeat end: 5144
Forward primer Primer sequence:   ATCAGGAGAAGCTGGTGCAC     Tm(°C): 60.036     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GCCTGGTGAAGAGACCTCAG     Tm(°C): 59.751     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 4865     End: 5182     Product size (bp): 318
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101247309     NCBI Gene Symbol: LOC101247309
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH12; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH12; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   4     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015441.3      Gene Start and end within genomic accession: 4509464 ...... 4517796
CDS Sequence 101247309
Marker Information
Marker Type PGTM
Repeat type & sequence Repeat type:      Repeat sequence:
Repeat start & end within CDS Repeat start:      Repeat end:
Forward primer Primer sequence:   ACTGAGAAGGCCATTGGAGC     Tm(°C): 60.035     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GAGGCAAAAGTCCTCCACGA     Tm(°C): 59.965     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 4064     End: 4350     Product size (bp): 287
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101260893     NCBI Gene Symbol: LOC101260893
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH11; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH11; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   11     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015448.3      Gene Start and end within genomic accession: 3393242 ...... 3400511
CDS Sequence 101260893
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (AACTG)2
Repeat start & end within CDS Repeat start: 128     Repeat end: 137
Forward primer Primer sequence:   ATCGGGACATGGGTTTCACC     Tm(°C): 60.034     GC (%): 55     Size: 20
Reverse primer Primer sequence:   TGGGTTTTCTGGGGTGAAGG     Tm(°C): 59.813     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 32     End: 188     Product size (bp): 157
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101260893     NCBI Gene Symbol: LOC101260893
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH11; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH11; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   11     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015448.3      Gene Start and end within genomic accession: 3393242 ...... 3400511
CDS Sequence 101260893
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (GTTAAG)2
Repeat start & end within CDS Repeat start: 276     Repeat end: 287
Forward primer Primer sequence:   CCTTCACCCCAGAAAACCCA     Tm(°C): 59.813     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GCTCCTGGTAAACACCAATCC     Tm(°C): 58.908     GC (%): 52.381     Size: 21
Primer start, end within sequence and product size Start: 169     End: 513     Product size (bp): 345
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101260893     NCBI Gene Symbol: LOC101260893
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH11; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH11; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   11     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015448.3      Gene Start and end within genomic accession: 3393242 ...... 3400511
CDS Sequence 101260893
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (TTG)3
Repeat start & end within CDS Repeat start: 472     Repeat end: 480
Forward primer Primer sequence:   CCTTCACCCCAGAAAACCCA     Tm(°C): 59.813     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GCTCCTGGTAAACACCAATCC     Tm(°C): 58.908     GC (%): 52.381     Size: 21
Primer start, end within sequence and product size Start: 169     End: 513     Product size (bp): 345
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101260893     NCBI Gene Symbol: LOC101260893
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH11; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH11; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   11     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015448.3      Gene Start and end within genomic accession: 3393242 ...... 3400511
CDS Sequence 101260893
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (TTA)3
Repeat start & end within CDS Repeat start: 1172     Repeat end: 1180
Forward primer Primer sequence:   AAGCCAGGGGTGCTATGATG     Tm(°C): 59.816     GC (%): 55     Size: 20
Reverse primer Primer sequence:   AGAAGTAGCCTGCAAGCTGG     Tm(°C): 60.036     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 929     End: 1221     Product size (bp): 293
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101260893     NCBI Gene Symbol: LOC101260893
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH11; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH11; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   11     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015448.3      Gene Start and end within genomic accession: 3393242 ...... 3400511
CDS Sequence 101260893
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (CTTTA)2
Repeat start & end within CDS Repeat start: 2175     Repeat end: 2184
Forward primer Primer sequence:   CCGAGCCCCAAAGCTATTGA     Tm(°C): 60.107     GC (%): 55     Size: 20
Reverse primer Primer sequence:   TCCCTAGGCACAATCTCCCA     Tm(°C): 59.956     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1872     End: 2221     Product size (bp): 350
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101260893     NCBI Gene Symbol: LOC101260893
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH11; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH11; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   11     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015448.3      Gene Start and end within genomic accession: 3393242 ...... 3400511
CDS Sequence 101260893
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (TGGAGC)2
Repeat start & end within CDS Repeat start: 2964     Repeat end: 2975
Forward primer Primer sequence:   CGGCCTCTGTTGCTCTCTTT     Tm(°C): 60.321     GC (%): 55     Size: 20
Reverse primer Primer sequence:   TTCTCCACTTTGTCCTGGCC     Tm(°C): 59.89     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 2944     End: 3145     Product size (bp): 202
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101260893     NCBI Gene Symbol: LOC101260893
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH11; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH11; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   11     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015448.3      Gene Start and end within genomic accession: 3393242 ...... 3400511
CDS Sequence 101260893
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (CAA)3
Repeat start & end within CDS Repeat start: 3512     Repeat end: 3520
Forward primer Primer sequence:   TGTCATCCGTTGTGAGGCAA     Tm(°C): 59.892     GC (%): 50     Size: 20
Reverse primer Primer sequence:   CTGGAACACCTGGACACGAA     Tm(°C): 59.894     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 3410     End: 3671     Product size (bp): 262
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101260893     NCBI Gene Symbol: LOC101260893
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH11; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH11; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   11     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015448.3      Gene Start and end within genomic accession: 3393242 ...... 3400511
CDS Sequence 101260893
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (TCCTG)2
Repeat start & end within CDS Repeat start: 3832     Repeat end: 3841
Forward primer Primer sequence:   AAGGCCTTGGAGCAAATCGA     Tm(°C): 59.962     GC (%): 50     Size: 20
Reverse primer Primer sequence:   TCCAACCTTTCTTTGGCGGA     Tm(°C): 59.816     GC (%): 50     Size: 20
Primer start, end within sequence and product size Start: 3741     End: 3911     Product size (bp): 171
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101260893     NCBI Gene Symbol: LOC101260893
Gene Aliases
Gene description & Other designations Description:   ATP-dependent RNA helicase DEAH11; chloroplastic-like      Other designations:   ATP-dependent RNA helicase DEAH11; chloroplastic-like
Chromosome, Strand & Exon count Chromosome:   11     Strand:   plus     Exon count:   3
Gene Location within genomic sequence Genomic accession No. NC_015448.3      Gene Start and end within genomic accession: 3393242 ...... 3400511
CDS Sequence 101260893
Marker Information
Marker Type PGTM
Repeat type & sequence Repeat type:      Repeat sequence:
Repeat start & end within CDS Repeat start:      Repeat end:
Forward primer Primer sequence:   AATTTTGGCCAACGACCACG     Tm(°C): 59.969     GC (%): 50     Size: 20
Reverse primer Primer sequence:   TCGTTCCGCAACAGCTTACT     Tm(°C): 59.967     GC (%): 50     Size: 20
Primer start, end within sequence and product size Start: 2514     End: 2911     Product size (bp): 398
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101264721     NCBI Gene Symbol: LOC101264721
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4|putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   16
Gene Location within genomic sequence Genomic accession No. NC_015442.3      Gene Start and end within genomic accession: 9724891 ...... 9744167
CDS Sequence 101264721
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (AGT)3
Repeat start & end within CDS Repeat start: 63     Repeat end: 71
Forward primer Primer sequence:   AGAAACAGTGAAGGAAAACCCA     Tm(°C): 58.024     GC (%): 40.909     Size: 22
Reverse primer Primer sequence:   AAAGACTCTCGCGAAGGAGC     Tm(°C): 60.109     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 41     End: 330     Product size (bp): 290
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101264721     NCBI Gene Symbol: LOC101264721
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4|putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   16
Gene Location within genomic sequence Genomic accession No. NC_015442.3      Gene Start and end within genomic accession: 9724891 ...... 9744167
CDS Sequence 101264721
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (CTGTTT)2
Repeat start & end within CDS Repeat start: 185     Repeat end: 196
Forward primer Primer sequence:   TTGGTGAGACTGGTTCTGGT     Tm(°C): 58.493     GC (%): 50     Size: 20
Reverse primer Primer sequence:   AAAGACTCTCGCGAAGGAGC     Tm(°C): 60.109     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 76     End: 330     Product size (bp): 255
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101264721     NCBI Gene Symbol: LOC101264721
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4|putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   16
Gene Location within genomic sequence Genomic accession No. NC_015442.3      Gene Start and end within genomic accession: 9724891 ...... 9744167
CDS Sequence 101264721
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (AGA)3
Repeat start & end within CDS Repeat start: 1409     Repeat end: 1417
Forward primer Primer sequence:   CTTCCCGCCCCAAGTAAGAG     Tm(°C): 60.108     GC (%): 60     Size: 20
Reverse primer Primer sequence:   GTACTCCTGTTGGCCACCTC     Tm(°C): 60.036     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 1383     End: 1667     Product size (bp): 285
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101264721     NCBI Gene Symbol: LOC101264721
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4|putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   16
Gene Location within genomic sequence Genomic accession No. NC_015442.3      Gene Start and end within genomic accession: 9724891 ...... 9744167
CDS Sequence 101264721
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (GGATG)2
Repeat start & end within CDS Repeat start: 1809     Repeat end: 1818
Forward primer Primer sequence:   GAGGTGGCCAACAGGAGTAC     Tm(°C): 60.036     GC (%): 60     Size: 20
Reverse primer Primer sequence:   GCAACCCATCGCATCTCAAC     Tm(°C): 59.901     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1648     End: 1906     Product size (bp): 259
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101264721     NCBI Gene Symbol: LOC101264721
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4|putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   16
Gene Location within genomic sequence Genomic accession No. NC_015442.3      Gene Start and end within genomic accession: 9724891 ...... 9744167
CDS Sequence 101264721
Marker Information
Marker Type PGTM
Repeat type & sequence Repeat type:      Repeat sequence:
Repeat start & end within CDS Repeat start:      Repeat end:
Forward primer Primer sequence:   GAGGTGGCCAACAGGAGTAC     Tm(°C): 60.036     GC (%): 60     Size: 20
Reverse primer Primer sequence:   GCTTGTATCATGCTGGCACG     Tm(°C): 59.971     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1648     End: 2062     Product size (bp): 415
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101265161     NCBI Gene Symbol: LOC101265161
Gene Aliases
Gene description & Other designations Description:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10      Other designations:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10|putative ATP-dependent RNA helicase DHX33
Chromosome, Strand & Exon count Chromosome:   9     Strand:   plus     Exon count:   12
Gene Location within genomic sequence Genomic accession No. NC_015446.3      Gene Start and end within genomic accession: 1590954 ...... 1599904
CDS Sequence 101265161
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (ATCAAA)2
Repeat start & end within CDS Repeat start: 41     Repeat end: 52
Forward primer Primer sequence:   CCTTCAATGGCTGCTAACAATT     Tm(°C): 57.539     GC (%): 40.909     Size: 22
Reverse primer Primer sequence:   GTGATAGCAGCCACACGTCT     Tm(°C): 60.109     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 3     End: 289     Product size (bp): 287
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101265161     NCBI Gene Symbol: LOC101265161
Gene Aliases
Gene description & Other designations Description:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10      Other designations:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10|putative ATP-dependent RNA helicase DHX33
Chromosome, Strand & Exon count Chromosome:   9     Strand:   plus     Exon count:   12
Gene Location within genomic sequence Genomic accession No. NC_015446.3      Gene Start and end within genomic accession: 1590954 ...... 1599904
CDS Sequence 101265161
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (TGTTCA)2
Repeat start & end within CDS Repeat start: 741     Repeat end: 752
Forward primer Primer sequence:   CCTGGAGGAAAGGGTTGACA     Tm(°C): 59.229     GC (%): 55     Size: 20
Reverse primer Primer sequence:   ACAAGCACATCACCAGGTCC     Tm(°C): 60.251     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 599     End: 871     Product size (bp): 273
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101265161     NCBI Gene Symbol: LOC101265161
Gene Aliases
Gene description & Other designations Description:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10      Other designations:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10|putative ATP-dependent RNA helicase DHX33
Chromosome, Strand & Exon count Chromosome:   9     Strand:   plus     Exon count:   12
Gene Location within genomic sequence Genomic accession No. NC_015446.3      Gene Start and end within genomic accession: 1590954 ...... 1599904
CDS Sequence 101265161
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (AAGCTC)2
Repeat start & end within CDS Repeat start: 1181     Repeat end: 1192
Forward primer Primer sequence:   ACTGGTGAAAGCCCGAACAT     Tm(°C): 59.89     GC (%): 50     Size: 20
Reverse primer Primer sequence:   CTGCACGTCCACTCCTTTGA     Tm(°C): 60.25     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1112     End: 1212     Product size (bp): 101
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101265161     NCBI Gene Symbol: LOC101265161
Gene Aliases
Gene description & Other designations Description:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10      Other designations:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10|putative ATP-dependent RNA helicase DHX33
Chromosome, Strand & Exon count Chromosome:   9     Strand:   plus     Exon count:   12
Gene Location within genomic sequence Genomic accession No. NC_015446.3      Gene Start and end within genomic accession: 1590954 ...... 1599904
CDS Sequence 101265161
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (AGCCA)2
Repeat start & end within CDS Repeat start: 2007     Repeat end: 2016
Forward primer Primer sequence:   AGATGCCTTGCTGCCTCATT     Tm(°C): 60.033     GC (%): 50     Size: 20
Reverse primer Primer sequence:   TACAAGTGGGGTGCCAACTC     Tm(°C): 59.89     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1890     End: 2119     Product size (bp): 230
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101265161     NCBI Gene Symbol: LOC101265161
Gene Aliases
Gene description & Other designations Description:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10      Other designations:   pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10|putative ATP-dependent RNA helicase DHX33
Chromosome, Strand & Exon count Chromosome:   9     Strand:   plus     Exon count:   12
Gene Location within genomic sequence Genomic accession No. NC_015446.3      Gene Start and end within genomic accession: 1590954 ...... 1599904
CDS Sequence 101265161
Marker Information
Marker Type PGTM
Repeat type & sequence Repeat type:      Repeat sequence:
Repeat start & end within CDS Repeat start:      Repeat end:
Forward primer Primer sequence:   AGATGCCTTGCTGCCTCATT     Tm(°C): 60.033     GC (%): 50     Size: 20
Reverse primer Primer sequence:   GGAACAGGACAGAAGACGGG     Tm(°C): 60.037     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 1890     End: 2004     Product size (bp): 115
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (CCAAGT)2
Repeat start & end within CDS Repeat start: 254     Repeat end: 265
Forward primer Primer sequence:   GGTGCTGAAATGCCCGACTA     Tm(°C): 60.392     GC (%): 55     Size: 20
Reverse primer Primer sequence:   CGCCTCCTATCCCGTTCTTC     Tm(°C): 59.968     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 183     End: 421     Product size (bp): 239
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (ATAGGG)2
Repeat start & end within CDS Repeat start: 329     Repeat end: 340
Forward primer Primer sequence:   GGAGTCGAACAAGGATGGCA     Tm(°C): 60.036     GC (%): 55     Size: 20
Reverse primer Primer sequence:   CGCCTCCTATCCCGTTCTTC     Tm(°C): 59.968     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 272     End: 421     Product size (bp): 150
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (AGGGAT)2
Repeat start & end within CDS Repeat start: 466     Repeat end: 477
Forward primer Primer sequence:   GAAGAACGGGATAGGAGGCG     Tm(°C): 59.968     GC (%): 60     Size: 20
Reverse primer Primer sequence:   AGCCCTGCGTTCAACTCTAC     Tm(°C): 60.037     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 402     End: 524     Product size (bp): 123
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Compound     Repeat sequence: (GATGGA)2gatgtatatgcaaagggtagtagagatgattatgagcaagacggg(
GAT)3
Repeat start & end within CDS Repeat start: 547     Repeat end: 612
Forward primer Primer sequence:   GTAGAGTTGAACGCAGGGCT     Tm(°C): 60.037     GC (%): 55     Size: 20
Reverse primer Primer sequence:   ACGTCCTGGTCCCGTTTTAC     Tm(°C): 59.966     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 505     End: 817     Product size (bp): 313
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (TTGTT)2
Repeat start & end within CDS Repeat start: 705     Repeat end: 714
Forward primer Primer sequence:   GTAGAGTTGAACGCAGGGCT     Tm(°C): 60.037     GC (%): 55     Size: 20
Reverse primer Primer sequence:   ACGTCCTGGTCCCGTTTTAC     Tm(°C): 59.966     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 505     End: 817     Product size (bp): 313
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (TTGAA)2
Repeat start & end within CDS Repeat start: 1190     Repeat end: 1199
Forward primer Primer sequence:   CTGGGGGTCCATGAACATCC     Tm(°C): 60.107     GC (%): 60     Size: 20
Reverse primer Primer sequence:   GAGCCAAATGCCTCTCACCT     Tm(°C): 60.035     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1101     End: 1440     Product size (bp): 340
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (TGC)3
Repeat start & end within CDS Repeat start: 1296     Repeat end: 1304
Forward primer Primer sequence:   CTGGGGGTCCATGAACATCC     Tm(°C): 60.107     GC (%): 60     Size: 20
Reverse primer Primer sequence:   GAGCCAAATGCCTCTCACCT     Tm(°C): 60.035     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1101     End: 1440     Product size (bp): 340
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (GCAGAG)2
Repeat start & end within CDS Repeat start: 1551     Repeat end: 1562
Forward primer Primer sequence:   AGGGAGCAGCAACAGAGAAC     Tm(°C): 59.964     GC (%): 55     Size: 20
Reverse primer Primer sequence:   CATGGACAGCCTGAACCAGT     Tm(°C): 59.963     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 1341     End: 1608     Product size (bp): 268
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (GAAGA)2
Repeat start & end within CDS Repeat start: 1986     Repeat end: 1995
Forward primer Primer sequence:   GGTGAGGAGGTCGGTTATGC     Tm(°C): 60.179     GC (%): 60     Size: 20
Reverse primer Primer sequence:   TGCATCCAAAGTTGCAGACG     Tm(°C): 59.407     GC (%): 50     Size: 20
Primer start, end within sequence and product size Start: 1785     End: 2036     Product size (bp): 252
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Compound     Repeat sequence: (GAAAA)2(GTT)3
Repeat start & end within CDS Repeat start: 2364     Repeat end: 2382
Forward primer Primer sequence:   GTGCCTTGCCCAGTGAAATG     Tm(°C): 60.038     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GCACTTCCCAGGTCCAGTAC     Tm(°C): 60.036     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 2311     End: 2567     Product size (bp): 257
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (GCAAA)2
Repeat start & end within CDS Repeat start: 2449     Repeat end: 2458
Forward primer Primer sequence:   GTGCCTTGCCCAGTGAAATG     Tm(°C): 60.038     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GCACTTCCCAGGTCCAGTAC     Tm(°C): 60.036     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 2311     End: 2567     Product size (bp): 257
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101266273     NCBI Gene Symbol: LOC101266273
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   1     Strand:   plus     Exon count:   1
Gene Location within genomic sequence Genomic accession No. NC_015438.3      Gene Start and end within genomic accession: 97328221 ...... 97332145
CDS Sequence 101266273
Marker Information
Marker Type PGTM
Repeat type & sequence Repeat type:      Repeat sequence:
Repeat start & end within CDS Repeat start:      Repeat end:
Forward primer Primer sequence:   GAAGAACGGGATAGGAGGCG     Tm(°C): 59.968     GC (%): 60     Size: 20
Reverse primer Primer sequence:   ACGTCCTGGTCCCGTTTTAC     Tm(°C): 59.966     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 402     End: 817     Product size (bp): 416
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (GAA)3
Repeat start & end within CDS Repeat start: 400     Repeat end: 408
Forward primer Primer sequence:   AGTGGTGCTGAAATGCCTGA     Tm(°C): 59.889     GC (%): 50     Size: 20
Reverse primer Primer sequence:   TCCCTCTCTCGCCTACTACC     Tm(°C): 59.527     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 180     End: 430     Product size (bp): 251
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Compound     Repeat sequence: (ATG)3gtagagctgaatgtaggacttcagaaaggcacaga(GACAGG)3gttag
agacagggacatggttaga(GACAGG)2acta(ATG)4catatgcaaaaggtagg
agagatgaatatgaacaagaaagc(GAT)3
Repeat start & end within CDS Repeat start: 497     Repeat end: 660
Forward primer Primer sequence:   ATGGGGAGGAAGAAGAACGC     Tm(°C): 59.747     GC (%): 55     Size: 20
Reverse primer Primer sequence:   CACCCTTGATACCCTCCCCT     Tm(°C): 60.328     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 391     End: 740     Product size (bp): 350
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (TTGTT)2
Repeat start & end within CDS Repeat start: 753     Repeat end: 762
Forward primer Primer sequence:   GGGGAGGGTATCAAGGGTGA     Tm(°C): 60.327     GC (%): 60     Size: 20
Reverse primer Primer sequence:   ACAAACTCAGCTTCTGCCCA     Tm(°C): 59.817     GC (%): 50     Size: 20
Primer start, end within sequence and product size Start: 722     End: 909     Product size (bp): 188
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (GTTGA)2
Repeat start & end within CDS Repeat start: 1234     Repeat end: 1243
Forward primer Primer sequence:   TGAAGAAGGGGACGGAATGC     Tm(°C): 60.035     GC (%): 55     Size: 20
Reverse primer Primer sequence:   CCAACACCCCTAAGCTCCTG     Tm(°C): 60.035     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 1178     End: 1504     Product size (bp): 327
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (TGC)3
Repeat start & end within CDS Repeat start: 1341     Repeat end: 1349
Forward primer Primer sequence:   TGAAGAAGGGGACGGAATGC     Tm(°C): 60.035     GC (%): 55     Size: 20
Reverse primer Primer sequence:   CCAACACCCCTAAGCTCCTG     Tm(°C): 60.035     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 1178     End: 1504     Product size (bp): 327
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (GCAGAG)2
Repeat start & end within CDS Repeat start: 1596     Repeat end: 1607
Forward primer Primer sequence:   CAGGAGCTTAGGGGTGTTGG     Tm(°C): 60.035     GC (%): 60     Size: 20
Reverse primer Primer sequence:   CCTCGGCGAGATACTGTGTC     Tm(°C): 59.97     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 1485     End: 1728     Product size (bp): 244
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (GACCT)2
Repeat start & end within CDS Repeat start: 2039     Repeat end: 2048
Forward primer Primer sequence:   TGTACTGGGCCAGAAACTGT     Tm(°C): 58.863     GC (%): 50     Size: 20
Reverse primer Primer sequence:   AGCCGCATCAAGGTAATCACT     Tm(°C): 59.79     GC (%): 47.619     Size: 21
Primer start, end within sequence and product size Start: 1866     End: 2195     Product size (bp): 330
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (GTT)3
Repeat start & end within CDS Repeat start: 2419     Repeat end: 2427
Forward primer Primer sequence:   GTGCCTTGCCCAGTGAAATG     Tm(°C): 60.038     GC (%): 55     Size: 20
Reverse primer Primer sequence:   TGCGGTAGGGGACATTTCAC     Tm(°C): 60.036     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 2356     End: 2663     Product size (bp): 308
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Penta     Repeat sequence: (GCAAA)2
Repeat start & end within CDS Repeat start: 2494     Repeat end: 2503
Forward primer Primer sequence:   GTGCCTTGCCCAGTGAAATG     Tm(°C): 60.038     GC (%): 55     Size: 20
Reverse primer Primer sequence:   TGCGGTAGGGGACATTTCAC     Tm(°C): 60.036     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 2356     End: 2663     Product size (bp): 308
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Enzyme Id:  K12818
Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   101267328     NCBI Gene Symbol: LOC101267328
Gene Aliases
Gene description & Other designations Description:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5      Other designations:   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
Chromosome, Strand & Exon count Chromosome:   7     Strand:   minus     Exon count:   2
Gene Location within genomic sequence Genomic accession No. NC_015444.3      Gene Start and end within genomic accession: 47836891 ...... 47840979
CDS Sequence 101267328
Marker Information
Marker Type PGTM
Repeat type & sequence Repeat type:      Repeat sequence:
Repeat start & end within CDS Repeat start:      Repeat end:
Forward primer Primer sequence:   CAGGAGCTTAGGGGTGTTGG     Tm(°C): 60.035     GC (%): 60     Size: 20
Reverse primer Primer sequence:   CCTCGGCGAGATACTGTGTC     Tm(°C): 59.97     GC (%): 60     Size: 20
Primer start, end within sequence and product size Start: 1485     End: 1728     Product size (bp): 244
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