Statistics
Number of enzymes: 1
Total Number of designed primers: 10
Number of PGTM primers: 1
Number of PMTM primers: 9
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Compound Repeat sequence: (AG)4gacgagtcgaagaagcggcaccgtgataaggag(GATCGA)2gagaagag
ggacagagag(CAT)3cgtgataagaaggatc(GA)6aaagcagtcggtatgaaa
gggagaaaagtgct(GATAGA)4 |
| Repeat start & end within CDS | Repeat start: 26 Repeat end: 189 |
| Forward primer | Primer sequence: TGGAAGAGTTGAAGCACAAGT Tm(°C): 57.718 GC (%): 42.857 Size: 21 |
| Reverse primer | Primer sequence: TCATCACGAACCTTGCTGCT Tm(°C): 59.965 GC (%): 50 Size: 20 |
| Primer start, end within sequence and product size | Start: 1 End: 256 Product size (bp): 256 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (TGA)4 |
| Repeat start & end within CDS | Repeat start: 252 Repeat end: 263 |
| Forward primer | Primer sequence: AAGAAGCGGCACCGTGATAA Tm(°C): 60.037 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: CTTCTCCCTTTCCCTCTCGC Tm(°C): 59.823 GC (%): 60 Size: 20 |
| Primer start, end within sequence and product size | Start: 42 End: 380 Product size (bp): 339 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Compound Repeat sequence: (AG)4(GAGAG)2* |
| Repeat start & end within CDS | Repeat start: 469 Repeat end: 481 |
| Forward primer | Primer sequence: AGCAGCAAGGTTCGTGATGA Tm(°C): 59.965 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: CGCGATTCCTCTCCTTCTCC Tm(°C): 59.969 GC (%): 60 Size: 20 |
| Primer start, end within sequence and product size | Start: 237 End: 504 Product size (bp): 268 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (CAAAC)2 |
| Repeat start & end within CDS | Repeat start: 636 Repeat end: 645 |
| Forward primer | Primer sequence: GGAGAAGGAGAGGAATCGCG Tm(°C): 59.969 GC (%): 60 Size: 20 |
| Reverse primer | Primer sequence: CAACCCCAAGTGTCTCCCTC Tm(°C): 59.963 GC (%): 60 Size: 20 |
| Primer start, end within sequence and product size | Start: 485 End: 831 Product size (bp): 347 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (TGA)3 |
| Repeat start & end within CDS | Repeat start: 888 Repeat end: 896 |
| Forward primer | Primer sequence: GAGGGAGACACTTGGGGTTG Tm(°C): 59.963 GC (%): 60 Size: 20 |
| Reverse primer | Primer sequence: ACTAACCACCTTGCCAGCTC Tm(°C): 59.963 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 812 End: 986 Product size (bp): 175 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (TGAGG)2 |
| Repeat start & end within CDS | Repeat start: 2178 Repeat end: 2187 |
| Forward primer | Primer sequence: TTGTCCAAAACACCAGGCCA Tm(°C): 60.325 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: CCATGAAGGGAGAGACAGGG Tm(°C): 59.164 GC (%): 60 Size: 20 |
| Primer start, end within sequence and product size | Start: 2023 End: 2338 Product size (bp): 316 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Di Repeat sequence: (CA)4 |
| Repeat start & end within CDS | Repeat start: 2266 Repeat end: 2273 |
| Forward primer | Primer sequence: ATTGGTTGAGGTGAGGCCAG Tm(°C): 59.961 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: GCCCCTGGCTGCTATACTAG Tm(°C): 59.389 GC (%): 60 Size: 20 |
| Primer start, end within sequence and product size | Start: 2171 End: 2432 Product size (bp): 262 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Hexa Repeat sequence: (GATGAA)2 |
| Repeat start & end within CDS | Repeat start: 2812 Repeat end: 2823 |
| Forward primer | Primer sequence: GCCAAGAAAGCACAGGCAAA Tm(°C): 59.895 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: GCTGAAACTGGAGTTGCTGC Tm(°C): 60.04 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 2754 End: 2935 Product size (bp): 182 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (GCT)3 |
| Repeat start & end within CDS | Repeat start: 2875 Repeat end: 2883 |
| Forward primer | Primer sequence: GCCAAGAAAGCACAGGCAAA Tm(°C): 59.895 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: GCTGAAACTGGAGTTGCTGC Tm(°C): 60.04 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 2754 End: 2935 Product size (bp): 182 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 101254580 NCBI Gene Symbol: LOC101254580 |
| Gene Aliases | |
| Gene description & Other designations | Description: DEAD-box ATP-dependent RNA helicase 42 Other designations: DEAD-box ATP-dependent RNA helicase 42 |
| Chromosome, Strand & Exon count | Chromosome: 12 Strand: plus Exon count: 2 |
| Gene Location within genomic sequence | Genomic accession No. NC_015449.3 Gene Start and end within genomic accession: 67100608 ...... 67105623 |
| CDS Sequence | 101254580 |
| Marker Information | |
| Marker Type | PGTM |
| Repeat type & sequence | Repeat type: Repeat sequence: |
| Repeat start & end within CDS | Repeat start: Repeat end: |
| Forward primer | Primer sequence: AGCAGCAAGGTTCGTGATGA Tm(°C): 59.965 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: CGCGATTCCTCTCCTTCTCC Tm(°C): 59.969 GC (%): 60 Size: 20 |
| Primer start, end within sequence and product size | Start: 237 End: 504 Product size (bp): 268 |
| JBrowse View | JBrowse |
