image


Statistics

Number of enzymes: 1
Total Number of designed primers: 5
Number of PGTM primers:     1
Number of PMTM primers:     4

Enzyme Id:  K11864

Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   PHAVU_005G174900g     NCBI Gene Symbol: PHAVU_005G174900g
Gene Aliases PHAVU_005G174900g
Gene description & Other designations Description:   hypothetical protein      Other designations:   hypothetical protein
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   10
Gene Location within genomic sequence Genomic accession No. NC_023755.1      Gene Start and end within genomic accession: 39837998 ...... 39842544
CDS Sequence PHAVU_005G174900g
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (TCT)3
Repeat start & end within CDS Repeat start: 90     Repeat end: 98
Forward primer Primer sequence:   GTGTGGTTGAGTTGCGTCAC     Tm(°C): 59.972     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GGTGGTCATTCTGTCAGCCA     Tm(°C): 59.963     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 33     End: 248     Product size (bp): 216
JBrowse View      JBrowse

Enzyme Id:  K11864

Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   PHAVU_005G174900g     NCBI Gene Symbol: PHAVU_005G174900g
Gene Aliases PHAVU_005G174900g
Gene description & Other designations Description:   hypothetical protein      Other designations:   hypothetical protein
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   10
Gene Location within genomic sequence Genomic accession No. NC_023755.1      Gene Start and end within genomic accession: 39837998 ...... 39842544
CDS Sequence PHAVU_005G174900g
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Tri     Repeat sequence: (GGC)3
Repeat start & end within CDS Repeat start: 213     Repeat end: 221
Forward primer Primer sequence:   GTGTGGTTGAGTTGCGTCAC     Tm(°C): 59.972     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GGTGGTCATTCTGTCAGCCA     Tm(°C): 59.963     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 33     End: 248     Product size (bp): 216
JBrowse View      JBrowse

Enzyme Id:  K11864

Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   PHAVU_005G174900g     NCBI Gene Symbol: PHAVU_005G174900g
Gene Aliases PHAVU_005G174900g
Gene description & Other designations Description:   hypothetical protein      Other designations:   hypothetical protein
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   10
Gene Location within genomic sequence Genomic accession No. NC_023755.1      Gene Start and end within genomic accession: 39837998 ...... 39842544
CDS Sequence PHAVU_005G174900g
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (TATTGA)2
Repeat start & end within CDS Repeat start: 510     Repeat end: 521
Forward primer Primer sequence:   GCACCCGCACATTACAGTTC     Tm(°C): 59.832     GC (%): 55     Size: 20
Reverse primer Primer sequence:   TCCTGCACAGAGTTCTCTGC     Tm(°C): 59.68     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 290     End: 592     Product size (bp): 303
JBrowse View      JBrowse

Enzyme Id:  K11864

Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   PHAVU_005G174900g     NCBI Gene Symbol: PHAVU_005G174900g
Gene Aliases PHAVU_005G174900g
Gene description & Other designations Description:   hypothetical protein      Other designations:   hypothetical protein
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   10
Gene Location within genomic sequence Genomic accession No. NC_023755.1      Gene Start and end within genomic accession: 39837998 ...... 39842544
CDS Sequence PHAVU_005G174900g
Marker Information
Marker Type PMTM
Repeat type & sequence Repeat type: Hexa     Repeat sequence: (GTTGAT)2
Repeat start & end within CDS Repeat start: 709     Repeat end: 720
Forward primer Primer sequence:   GGGGAGATCAGACTTGGGGA     Tm(°C): 60.327     GC (%): 60     Size: 20
Reverse primer Primer sequence:   TGAACGATGCATGGCCTCTT     Tm(°C): 60.035     GC (%): 50     Size: 20
Primer start, end within sequence and product size Start: 632     End: 764     Product size (bp): 133
JBrowse View      JBrowse

Enzyme Id:  K11864

Gene Information
NCBI Gene Accession Number & Symbol Accession Number:   PHAVU_005G174900g     NCBI Gene Symbol: PHAVU_005G174900g
Gene Aliases PHAVU_005G174900g
Gene description & Other designations Description:   hypothetical protein      Other designations:   hypothetical protein
Chromosome, Strand & Exon count Chromosome:   5     Strand:   plus     Exon count:   10
Gene Location within genomic sequence Genomic accession No. NC_023755.1      Gene Start and end within genomic accession: 39837998 ...... 39842544
CDS Sequence PHAVU_005G174900g
Marker Information
Marker Type PGTM
Repeat type & sequence Repeat type:      Repeat sequence:
Repeat start & end within CDS Repeat start:      Repeat end:
Forward primer Primer sequence:   GTGTGGTTGAGTTGCGTCAC     Tm(°C): 59.972     GC (%): 55     Size: 20
Reverse primer Primer sequence:   GGTGGTCATTCTGTCAGCCA     Tm(°C): 59.963     GC (%): 55     Size: 20
Primer start, end within sequence and product size Start: 33     End: 248     Product size (bp): 216
JBrowse View      JBrowse