|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103332629 NCBI Gene Symbol: LOC103332629 |
| Gene Aliases | |
| Gene description & Other designations | Description: methionine--tRNA ligase; chloroplastic/mitochondrial Other designations: methionine--tRNA ligase; chloroplastic/mitochondrial|probable methionine--tRNA ligase; mitochondrial |
| Chromosome, Strand & Exon count | Chromosome: LG5 Strand: plus Exon count: 11 |
| Gene Location within genomic sequence | Genomic accession No. NC_024130.1 Gene Start and end within genomic accession: 20491184 ...... 20495921 |
| CDS Sequence | 103332629 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Compound Repeat sequence: (GCC)3agtgacccttttgtcctca(CCACT)2 |
| Repeat start & end within CDS | Repeat start: 169 Repeat end: 206 |
| Forward primer | Primer sequence: AAAGCCACCACCCATCTCAG Tm(°C): 59.961 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: CCCAAATGAGGAGGGGCATT Tm(°C): 60.032 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 60 End: 235 Product size (bp): 176 |
| JBrowse View | JBrowse |
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| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103332629 NCBI Gene Symbol: LOC103332629 |
| Gene Aliases | |
| Gene description & Other designations | Description: methionine--tRNA ligase; chloroplastic/mitochondrial Other designations: methionine--tRNA ligase; chloroplastic/mitochondrial|probable methionine--tRNA ligase; mitochondrial |
| Chromosome, Strand & Exon count | Chromosome: LG5 Strand: plus Exon count: 11 |
| Gene Location within genomic sequence | Genomic accession No. NC_024130.1 Gene Start and end within genomic accession: 20491184 ...... 20495921 |
| CDS Sequence | 103332629 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (GTTTG)2 |
| Repeat start & end within CDS | Repeat start: 847 Repeat end: 856 |
| Forward primer | Primer sequence: TGTGTTGCACGGAAAGAGGA Tm(°C): 59.821 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: CACCCTGATGAAACGGCTCT Tm(°C): 60.036 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 627 End: 934 Product size (bp): 308 |
| JBrowse View | JBrowse |
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| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103332629 NCBI Gene Symbol: LOC103332629 |
| Gene Aliases | |
| Gene description & Other designations | Description: methionine--tRNA ligase; chloroplastic/mitochondrial Other designations: methionine--tRNA ligase; chloroplastic/mitochondrial|probable methionine--tRNA ligase; mitochondrial |
| Chromosome, Strand & Exon count | Chromosome: LG5 Strand: plus Exon count: 11 |
| Gene Location within genomic sequence | Genomic accession No. NC_024130.1 Gene Start and end within genomic accession: 20491184 ...... 20495921 |
| CDS Sequence | 103332629 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (CAATT)2 |
| Repeat start & end within CDS | Repeat start: 1233 Repeat end: 1242 |
| Forward primer | Primer sequence: AAATTCGGGTCTGATGCGGT Tm(°C): 60.035 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: CTAGCACAGCCTCACAAGCT Tm(°C): 60.037 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1122 End: 1422 Product size (bp): 301 |
| JBrowse View | JBrowse |
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| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103332629 NCBI Gene Symbol: LOC103332629 |
| Gene Aliases | |
| Gene description & Other designations | Description: methionine--tRNA ligase; chloroplastic/mitochondrial Other designations: methionine--tRNA ligase; chloroplastic/mitochondrial|probable methionine--tRNA ligase; mitochondrial |
| Chromosome, Strand & Exon count | Chromosome: LG5 Strand: plus Exon count: 11 |
| Gene Location within genomic sequence | Genomic accession No. NC_024130.1 Gene Start and end within genomic accession: 20491184 ...... 20495921 |
| CDS Sequence | 103332629 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (GGTCA)2 |
| Repeat start & end within CDS | Repeat start: 1675 Repeat end: 1684 |
| Forward primer | Primer sequence: CTACCTGGAGCGACACCAAG Tm(°C): 60.109 GC (%): 60 Size: 20 |
| Reverse primer | Primer sequence: ACCCGTTTGGCTTGAGGTAG Tm(°C): 59.964 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1636 End: 1798 Product size (bp): 163 |
| JBrowse View | JBrowse |
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| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103332629 NCBI Gene Symbol: LOC103332629 |
| Gene Aliases | |
| Gene description & Other designations | Description: methionine--tRNA ligase; chloroplastic/mitochondrial Other designations: methionine--tRNA ligase; chloroplastic/mitochondrial|probable methionine--tRNA ligase; mitochondrial |
| Chromosome, Strand & Exon count | Chromosome: LG5 Strand: plus Exon count: 11 |
| Gene Location within genomic sequence | Genomic accession No. NC_024130.1 Gene Start and end within genomic accession: 20491184 ...... 20495921 |
| CDS Sequence | 103332629 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Compound Repeat sequence: (GCA)3gcgagaataaa(CTT)3 |
| Repeat start & end within CDS | Repeat start: 7 Repeat end: 35 |
| Forward primer | Primer sequence: None Tm(°C): GC (%): Size: |
| Reverse primer | Primer sequence: None Tm(°C): GC (%): Size: |
| Primer start, end within sequence and product size | Start: End: Product size (bp): |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103332629 NCBI Gene Symbol: LOC103332629 |
| Gene Aliases | |
| Gene description & Other designations | Description: methionine--tRNA ligase; chloroplastic/mitochondrial Other designations: methionine--tRNA ligase; chloroplastic/mitochondrial|probable methionine--tRNA ligase; mitochondrial |
| Chromosome, Strand & Exon count | Chromosome: LG5 Strand: plus Exon count: 11 |
| Gene Location within genomic sequence | Genomic accession No. NC_024130.1 Gene Start and end within genomic accession: 20491184 ...... 20495921 |
| CDS Sequence | 103332629 |
| Marker Information | |
| Marker Type | PGTM |
| Repeat type & sequence | Repeat type: Repeat sequence: |
| Repeat start & end within CDS | Repeat start: Repeat end: |
| Forward primer | Primer sequence: AAAGCCACCACCCATCTCAG Tm(°C): 59.961 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: CCCAAATGAGGAGGGGCATT Tm(°C): 60.032 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 60 End: 235 Product size (bp): 176 |
| JBrowse View | JBrowse |
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| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103322759 NCBI Gene Symbol: LOC103322759 |
| Gene Aliases | |
| Gene description & Other designations | Description: probable methionine--tRNA ligase Other designations: probable methionine--tRNA ligase |
| Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 18 |
| Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 29491441 ...... 29499232 |
| CDS Sequence | 103322759 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (CGA)3 |
| Repeat start & end within CDS | Repeat start: 39 Repeat end: 47 |
| Forward primer | Primer sequence: GGTCGCCACGTGATGATCTT Tm(°C): 60.46 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: CACAGCCGATAATGTTGCCG Tm(°C): 59.972 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 18 End: 207 Product size (bp): 190 |
| JBrowse View | JBrowse |
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| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103322759 NCBI Gene Symbol: LOC103322759 |
| Gene Aliases | |
| Gene description & Other designations | Description: probable methionine--tRNA ligase Other designations: probable methionine--tRNA ligase |
| Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 18 |
| Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 29491441 ...... 29499232 |
| CDS Sequence | 103322759 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (GCCTT)2 |
| Repeat start & end within CDS | Repeat start: 157 Repeat end: 166 |
| Forward primer | Primer sequence: TCACAATGACCCAGAAGGCC Tm(°C): 59.962 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: CACAGCCGATAATGTTGCCG Tm(°C): 59.972 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 91 End: 207 Product size (bp): 117 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103322759 NCBI Gene Symbol: LOC103322759 |
| Gene Aliases | |
| Gene description & Other designations | Description: probable methionine--tRNA ligase Other designations: probable methionine--tRNA ligase |
| Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 18 |
| Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 29491441 ...... 29499232 |
| CDS Sequence | 103322759 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Hexa Repeat sequence: (GGTTCC)2 |
| Repeat start & end within CDS | Repeat start: 858 Repeat end: 869 |
| Forward primer | Primer sequence: TGGAACTCCCTTCGCTCAAG Tm(°C): 59.678 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: TCCACCATTGCTCCCAATCA Tm(°C): 59.297 GC (%): 50 Size: 20 |
| Primer start, end within sequence and product size | Start: 706 End: 972 Product size (bp): 267 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103322759 NCBI Gene Symbol: LOC103322759 |
| Gene Aliases | |
| Gene description & Other designations | Description: probable methionine--tRNA ligase Other designations: probable methionine--tRNA ligase |
| Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 18 |
| Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 29491441 ...... 29499232 |
| CDS Sequence | 103322759 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (ACCAC)2 |
| Repeat start & end within CDS | Repeat start: 2234 Repeat end: 2243 |
| Forward primer | Primer sequence: GCAATCTGAAGCCAGCAACC Tm(°C): 60.109 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: CGCCAACTTGAGCAGCTTTT Tm(°C): 59.969 GC (%): 50 Size: 20 |
| Primer start, end within sequence and product size | Start: 2164 End: 2283 Product size (bp): 120 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103322759 NCBI Gene Symbol: LOC103322759 |
| Gene Aliases | |
| Gene description & Other designations | Description: probable methionine--tRNA ligase Other designations: probable methionine--tRNA ligase |
| Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 18 |
| Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 29491441 ...... 29499232 |
| CDS Sequence | 103322759 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (AAG)3 |
| Repeat start & end within CDS | Repeat start: 2338 Repeat end: 2346 |
| Forward primer | Primer sequence: AAAAGCTGCTCAAGTTGGCG Tm(°C): 59.969 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: TAGCAGGCCACTAGGTCAGT Tm(°C): 59.959 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 2264 End: 2401 Product size (bp): 138 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103322759 NCBI Gene Symbol: LOC103322759 |
| Gene Aliases | |
| Gene description & Other designations | Description: probable methionine--tRNA ligase Other designations: probable methionine--tRNA ligase |
| Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 18 |
| Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 29491441 ...... 29499232 |
| CDS Sequence | 103322759 |
| Marker Information | |
| Marker Type | PGTM |
| Repeat type & sequence | Repeat type: Repeat sequence: |
| Repeat start & end within CDS | Repeat start: Repeat end: |
| Forward primer | Primer sequence: CCAACCTCGTTGTGCTGTTG Tm(°C): 59.971 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: GCGATATGTGCGTCTCAGGA Tm(°C): 59.969 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1565 End: 1704 Product size (bp): 140 |
| JBrowse View | JBrowse |
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| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103334288 NCBI Gene Symbol: LOC103334288 |
| Gene Aliases | |
| Gene description & Other designations | Description: probable methionine--tRNA ligase Other designations: probable methionine--tRNA ligase |
| Chromosome, Strand & Exon count | Chromosome: LG6 Strand: plus Exon count: 14 |
| Gene Location within genomic sequence | Genomic accession No. NC_024131.1 Gene Start and end within genomic accession: 2408133 ...... 2411733 |
| CDS Sequence | 103334288 |
| Marker Information | |
| Marker Type | PGTM |
| Repeat type & sequence | Repeat type: Repeat sequence: |
| Repeat start & end within CDS | Repeat start: Repeat end: |
| Forward primer | Primer sequence: CCTCACCTTGGCACCATCAT Tm(°C): 60.034 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: TCCCCTCGTGCAGAGTCATA Tm(°C): 60.034 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 111 End: 529 Product size (bp): 419 |
| JBrowse View | JBrowse |
