PlantPathMarks Database

Statistics

Number of enzymes: 1

Total Number of designed primers: 6

Number of PGTM primers: 3

Number of PMTM primers: 3

Enzyme Id: K01772
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101247019 NCBI Gene Symbol: LOC101247019
Gene Aliases
Gene description & Other designations	Description: ferrochelatase-2; chloroplastic Other designations: LOW QUALITY PROTEIN: ferrochelatase-2; chloroplastic
Chromosome, Strand & Exon count	Chromosome: 5 Strand: minus Exon count: 9
Gene Location within genomic sequence	Genomic accession No. NC_015442.3 Gene Start and end within genomic accession: 22690079 ...... 22709157
CDS Sequence	101247019
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Tri Repeat sequence: (TGG)3
Repeat start & end within CDS	Repeat start: 444 Repeat end: 452
Forward primer	Primer sequence: GCTAGAGCACCCAAGAGCAA Tm(°C): 60.036 GC (%): 55 Size: 20
Reverse primer	Primer sequence: ATCCGCTCAATGGCTTCCTC Tm(°C): 60.179 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 405 End: 586 Product size (bp): 182
JBrowse View	JBrowse

Enzyme Id: K01772
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101247019 NCBI Gene Symbol: LOC101247019
Gene Aliases
Gene description & Other designations	Description: ferrochelatase-2; chloroplastic Other designations: LOW QUALITY PROTEIN: ferrochelatase-2; chloroplastic
Chromosome, Strand & Exon count	Chromosome: 5 Strand: minus Exon count: 9
Gene Location within genomic sequence	Genomic accession No. NC_015442.3 Gene Start and end within genomic accession: 22690079 ...... 22709157
CDS Sequence	101247019
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Penta Repeat sequence: (GAGAA)2
Repeat start & end within CDS	Repeat start: 928 Repeat end: 937
Forward primer	Primer sequence: GTGGTTCAAGCCTTCGCCTA Tm(°C): 60.321 GC (%): 55 Size: 20
Reverse primer	Primer sequence: GCCATTCAACAGGTCCAACC Tm(°C): 59.397 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 652 End: 993 Product size (bp): 342
JBrowse View	JBrowse

Enzyme Id: K01772
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101247019 NCBI Gene Symbol: LOC101247019
Gene Aliases
Gene description & Other designations	Description: ferrochelatase-2; chloroplastic Other designations: LOW QUALITY PROTEIN: ferrochelatase-2; chloroplastic
Chromosome, Strand & Exon count	Chromosome: 5 Strand: minus Exon count: 9
Gene Location within genomic sequence	Genomic accession No. NC_015442.3 Gene Start and end within genomic accession: 22690079 ...... 22709157
CDS Sequence	101247019
	Marker Information
Marker Type	PMTM
Repeat type & sequence	Repeat type: Penta Repeat sequence: (TTTCA)2
Repeat start & end within CDS	Repeat start: 1188 Repeat end: 1197
Forward primer	Primer sequence: AGTCTTCTTGCCGTGCCAAT Tm(°C): 60.251 GC (%): 50 Size: 20
Reverse primer	Primer sequence: TGCCAAGAGGGACCAATGAC Tm(°C): 59.962 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 1047 End: 1290 Product size (bp): 244
JBrowse View	JBrowse

Enzyme Id: K01772
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101247019 NCBI Gene Symbol: LOC101247019
Gene Aliases
Gene description & Other designations	Description: ferrochelatase-2; chloroplastic Other designations: LOW QUALITY PROTEIN: ferrochelatase-2; chloroplastic
Chromosome, Strand & Exon count	Chromosome: 5 Strand: minus Exon count: 9
Gene Location within genomic sequence	Genomic accession No. NC_015442.3 Gene Start and end within genomic accession: 22690079 ...... 22709157
CDS Sequence	101247019
	Marker Information
Marker Type	PGTM
Repeat type & sequence	Repeat type: Repeat sequence:
Repeat start & end within CDS	Repeat start: Repeat end:
Forward primer	Primer sequence: GCTAGAGCACCCAAGAGCAA Tm(°C): 60.036 GC (%): 55 Size: 20
Reverse primer	Primer sequence: CTCCTCCGGACGTTCAAACA Tm(°C): 59.967 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 405 End: 815 Product size (bp): 411
JBrowse View	JBrowse

Enzyme Id: K01772
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101248153 NCBI Gene Symbol: LOC101248153
Gene Aliases
Gene description & Other designations	Description: ferrochelatase-2; chloroplastic Other designations: ferrochelatase-2; chloroplastic
Chromosome, Strand & Exon count	Chromosome: 10 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015447.3 Gene Start and end within genomic accession: 63907852 ...... 63919553
CDS Sequence	101248153
	Marker Information
Marker Type	PGTM
Repeat type & sequence	Repeat type: Repeat sequence:
Repeat start & end within CDS	Repeat start: Repeat end:
Forward primer	Primer sequence: ATCGCCCATTGCACAAGAGA Tm(°C): 60.035 GC (%): 50 Size: 20
Reverse primer	Primer sequence: GTGAACAGCTTCCTCGGTGA Tm(°C): 59.966 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 229 End: 665 Product size (bp): 437
JBrowse View	JBrowse

Enzyme Id: K01772
	Gene Information
NCBI Gene Accession Number & Symbol	Accession Number: 101263738 NCBI Gene Symbol: LOC101263738
Gene Aliases
Gene description & Other designations	Description: ferrochelatase-2; chloroplastic-like Other designations: ferrochelatase-2; chloroplastic-like
Chromosome, Strand & Exon count	Chromosome: 8 Strand: minus Exon count: 10
Gene Location within genomic sequence	Genomic accession No. NC_015445.3 Gene Start and end within genomic accession: 53650255 ...... 53657826
CDS Sequence	101263738
	Marker Information
Marker Type	PGTM
Repeat type & sequence	Repeat type: Repeat sequence:
Repeat start & end within CDS	Repeat start: Repeat end:
Forward primer	Primer sequence: TCACCGAGGAAGCTGTTCAC Tm(°C): 59.966 GC (%): 55 Size: 20
Reverse primer	Primer sequence: ACTGATTGGCACTCCATGGG Tm(°C): 60.034 GC (%): 55 Size: 20
Primer start, end within sequence and product size	Start: 646 End: 938 Product size (bp): 293
JBrowse View	JBrowse