Statistics
Number of enzymes: 1
Total Number of designed primers: 14
Number of PGTM primers: 2
Number of PMTM primers: 12
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103330179 NCBI Gene Symbol: LOC103330179 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like |
| Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 11756876 ...... 11762168 |
| CDS Sequence | 103330179 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Compound Repeat sequence: (AG)4ctcaagtttgccttggaatctttc(TGGGA)2 |
| Repeat start & end within CDS | Repeat start: 158 Repeat end: 199 |
| Forward primer | Primer sequence: CGTCCCACTCTTCTTCGCTT Tm(°C): 60.038 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: TAAGACCTGCAGCCACGTTT Tm(°C): 59.892 GC (%): 50 Size: 20 |
| Primer start, end within sequence and product size | Start: 63 End: 240 Product size (bp): 178 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103330179 NCBI Gene Symbol: LOC103330179 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like |
| Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 11756876 ...... 11762168 |
| CDS Sequence | 103330179 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (TTGGA)2 |
| Repeat start & end within CDS | Repeat start: 557 Repeat end: 566 |
| Forward primer | Primer sequence: GGGAATGCACATGTTCCTGC Tm(°C): 59.826 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: GGTGGGCTCATCAAACTGGA Tm(°C): 59.962 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 414 End: 743 Product size (bp): 330 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103330179 NCBI Gene Symbol: LOC103330179 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like |
| Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 11756876 ...... 11762168 |
| CDS Sequence | 103330179 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (GCT)3 |
| Repeat start & end within CDS | Repeat start: 1318 Repeat end: 1326 |
| Forward primer | Primer sequence: GTGACGAATGAGGCTGTCCA Tm(°C): 60.037 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: ATTCCTCTCGGGCTCTCCAT Tm(°C): 60.105 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1293 End: 1598 Product size (bp): 306 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103330179 NCBI Gene Symbol: LOC103330179 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like |
| Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 11756876 ...... 11762168 |
| CDS Sequence | 103330179 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (ACC)3 |
| Repeat start & end within CDS | Repeat start: 1417 Repeat end: 1425 |
| Forward primer | Primer sequence: AATGAGGCTGTCCAGAAGGC Tm(°C): 60.035 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: ATTCCTCTCGGGCTCTCCAT Tm(°C): 60.105 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1299 End: 1598 Product size (bp): 300 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103330179 NCBI Gene Symbol: LOC103330179 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like |
| Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 11756876 ...... 11762168 |
| CDS Sequence | 103330179 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Compound Repeat sequence: (CAATG)2(GGA)3* |
| Repeat start & end within CDS | Repeat start: 1509 Repeat end: 1526 |
| Forward primer | Primer sequence: AATGAGGCTGTCCAGAAGGC Tm(°C): 60.035 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: ATTCCTCTCGGGCTCTCCAT Tm(°C): 60.105 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1299 End: 1598 Product size (bp): 300 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103330179 NCBI Gene Symbol: LOC103330179 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like |
| Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 11756876 ...... 11762168 |
| CDS Sequence | 103330179 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (TGC)3 |
| Repeat start & end within CDS | Repeat start: 2370 Repeat end: 2378 |
| Forward primer | Primer sequence: TCCTCCCTGAGGGACTGAAG Tm(°C): 59.958 GC (%): 60 Size: 20 |
| Reverse primer | Primer sequence: GCCTCAACATCTGCCGATTG Tm(°C): 59.62 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 2161 End: 2403 Product size (bp): 243 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103330179 NCBI Gene Symbol: LOC103330179 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like |
| Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 11756876 ...... 11762168 |
| CDS Sequence | 103330179 |
| Marker Information | |
| Marker Type | PGTM |
| Repeat type & sequence | Repeat type: Repeat sequence: |
| Repeat start & end within CDS | Repeat start: Repeat end: |
| Forward primer | Primer sequence: CGTTGTCTCCACATCCTGCT Tm(°C): 60.037 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: GCCTTCTGGACAGCCTCATT Tm(°C): 60.035 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1082 End: 1318 Product size (bp): 237 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103335992 NCBI Gene Symbol: LOC103335992 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase |
| Chromosome, Strand & Exon count | Chromosome: LG6 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024131.1 Gene Start and end within genomic accession: 14691779 ...... 14696859 |
| CDS Sequence | 103335992 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Compound Repeat sequence: (AG)4ctcaagtttgctttggaatctttc(TGGGA)2 |
| Repeat start & end within CDS | Repeat start: 41 Repeat end: 82 |
| Forward primer | Primer sequence: TGGCGTCTCACATTGTTGGA Tm(°C): 59.892 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: TTGCTGGGGATGTGCTTGAT Tm(°C): 59.96 GC (%): 50 Size: 20 |
| Primer start, end within sequence and product size | Start: 1 End: 178 Product size (bp): 178 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103335992 NCBI Gene Symbol: LOC103335992 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase |
| Chromosome, Strand & Exon count | Chromosome: LG6 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024131.1 Gene Start and end within genomic accession: 14691779 ...... 14696859 |
| CDS Sequence | 103335992 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (TTGAT)2 |
| Repeat start & end within CDS | Repeat start: 824 Repeat end: 833 |
| Forward primer | Primer sequence: AGCCCACGCTTGTTATGGAT Tm(°C): 59.744 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: TCCATCAACCAATCCGGCAA Tm(°C): 59.961 GC (%): 50 Size: 20 |
| Primer start, end within sequence and product size | Start: 619 End: 884 Product size (bp): 266 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103335992 NCBI Gene Symbol: LOC103335992 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase |
| Chromosome, Strand & Exon count | Chromosome: LG6 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024131.1 Gene Start and end within genomic accession: 14691779 ...... 14696859 |
| CDS Sequence | 103335992 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (GCT)3 |
| Repeat start & end within CDS | Repeat start: 1201 Repeat end: 1209 |
| Forward primer | Primer sequence: GACCAAGCTGGACCAGGAAA Tm(°C): 59.89 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: TATTCACGACGGACCCTCCT Tm(°C): 60.034 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1019 End: 1357 Product size (bp): 339 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103335992 NCBI Gene Symbol: LOC103335992 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase |
| Chromosome, Strand & Exon count | Chromosome: LG6 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024131.1 Gene Start and end within genomic accession: 14691779 ...... 14696859 |
| CDS Sequence | 103335992 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Tri Repeat sequence: (GAG)3 |
| Repeat start & end within CDS | Repeat start: 1378 Repeat end: 1386 |
| Forward primer | Primer sequence: AGGAGGGTCCGTCGTGAATA Tm(°C): 60.034 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: GGGCCTGTAAGCATTCCCTT Tm(°C): 60.033 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1338 End: 1681 Product size (bp): 344 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103335992 NCBI Gene Symbol: LOC103335992 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase |
| Chromosome, Strand & Exon count | Chromosome: LG6 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024131.1 Gene Start and end within genomic accession: 14691779 ...... 14696859 |
| CDS Sequence | 103335992 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Penta Repeat sequence: (CCCAA)2 |
| Repeat start & end within CDS | Repeat start: 1603 Repeat end: 1612 |
| Forward primer | Primer sequence: AGGAGGGTCCGTCGTGAATA Tm(°C): 60.034 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: GGGCCTGTAAGCATTCCCTT Tm(°C): 60.033 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1338 End: 1681 Product size (bp): 344 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103335992 NCBI Gene Symbol: LOC103335992 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase |
| Chromosome, Strand & Exon count | Chromosome: LG6 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024131.1 Gene Start and end within genomic accession: 14691779 ...... 14696859 |
| CDS Sequence | 103335992 |
| Marker Information | |
| Marker Type | PMTM |
| Repeat type & sequence | Repeat type: Compound Repeat sequence: (TGAAG)2ccagccctcagtaacatggt(TGC)3 |
| Repeat start & end within CDS | Repeat start: 2223 Repeat end: 2261 |
| Forward primer | Primer sequence: TGAAGTACGGTGCTGGCATT Tm(°C): 59.964 GC (%): 50 Size: 20 |
| Reverse primer | Primer sequence: CACTTGGTACTGGCGAGCTG Tm(°C): 61.016 GC (%): 60 Size: 20 |
| Primer start, end within sequence and product size | Start: 2059 End: 2296 Product size (bp): 238 |
| JBrowse View | JBrowse |
|
| Gene Information | |
| NCBI Gene Accession Number & Symbol | Accession Number: 103335992 NCBI Gene Symbol: LOC103335992 |
| Gene Aliases | |
| Gene description & Other designations | Description: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase Other designations: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase |
| Chromosome, Strand & Exon count | Chromosome: LG6 Strand: minus Exon count: 12 |
| Gene Location within genomic sequence | Genomic accession No. NC_024131.1 Gene Start and end within genomic accession: 14691779 ...... 14696859 |
| CDS Sequence | 103335992 |
| Marker Information | |
| Marker Type | PGTM |
| Repeat type & sequence | Repeat type: Repeat sequence: |
| Repeat start & end within CDS | Repeat start: Repeat end: |
| Forward primer | Primer sequence: AGGAGGGTCCGTCGTGAATA Tm(°C): 60.034 GC (%): 55 Size: 20 |
| Reverse primer | Primer sequence: GGGCCTGTAAGCATTCCCTT Tm(°C): 60.033 GC (%): 55 Size: 20 |
| Primer start, end within sequence and product size | Start: 1338 End: 1681 Product size (bp): 344 |
| JBrowse View | JBrowse |
