|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319568 NCBI Gene Symbol: LOC103319568 |
Gene Aliases | |
Gene description & Other designations | Description: thylakoid lumenal 29 kDa protein; chloroplastic Other designations: thylakoid lumenal 29 kDa protein; chloroplastic |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: minus Exon count: 11 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 5225557 ...... 5229488 |
CDS Sequence | 103319568 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Compound Repeat sequence: (CTGAT)2ccaattagcagcacaaagtgccacaaagcaaacctttct(TGC)3 |
Repeat start & end within CDS | Repeat start: 539 Repeat end: 596 |
Forward primer | Primer sequence: AAAACAAGGGGCTCACTGCT Tm(°C): 60.106 GC (%): 50 Size: 20 |
Reverse primer | Primer sequence: GGGTATCGCTCCGTCCAAAA Tm(°C): 60.108 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 448 End: 705 Product size (bp): 258 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319568 NCBI Gene Symbol: LOC103319568 |
Gene Aliases | |
Gene description & Other designations | Description: thylakoid lumenal 29 kDa protein; chloroplastic Other designations: thylakoid lumenal 29 kDa protein; chloroplastic |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: minus Exon count: 11 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 5225557 ...... 5229488 |
CDS Sequence | 103319568 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Penta Repeat sequence: (CTTGG)2 |
Repeat start & end within CDS | Repeat start: 784 Repeat end: 793 |
Forward primer | Primer sequence: TTTTGGACGGAGCGATACCC Tm(°C): 60.108 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TGCAGACAGAACAGCTAGCT Tm(°C): 59.028 GC (%): 50 Size: 20 |
Primer start, end within sequence and product size | Start: 686 End: 821 Product size (bp): 136 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319568 NCBI Gene Symbol: LOC103319568 |
Gene Aliases | |
Gene description & Other designations | Description: thylakoid lumenal 29 kDa protein; chloroplastic Other designations: thylakoid lumenal 29 kDa protein; chloroplastic |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: minus Exon count: 11 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 5225557 ...... 5229488 |
CDS Sequence | 103319568 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Penta Repeat sequence: (TGATC)2 |
Repeat start & end within CDS | Repeat start: 942 Repeat end: 951 |
Forward primer | Primer sequence: TTTTGGACGGAGCGATACCC Tm(°C): 60.108 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TTGTTGTCCCAAACTACTCAGT Tm(°C): 57.503 GC (%): 40.909 Size: 22 |
Primer start, end within sequence and product size | Start: 686 End: 986 Product size (bp): 301 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319568 NCBI Gene Symbol: LOC103319568 |
Gene Aliases | |
Gene description & Other designations | Description: thylakoid lumenal 29 kDa protein; chloroplastic Other designations: thylakoid lumenal 29 kDa protein; chloroplastic |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: minus Exon count: 11 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 5225557 ...... 5229488 |
CDS Sequence | 103319568 |
| Marker Information | |
Marker Type | PGTM |
Repeat type & sequence | Repeat type: Repeat sequence: |
Repeat start & end within CDS | Repeat start: Repeat end: |
Forward primer | Primer sequence: TGGCGGTCTCCTTCCTATCA Tm(°C): 60.033 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: ATCAGATCAGCAGCCTCAGC Tm(°C): 59.893 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 1 End: 256 Product size (bp): 256 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319703 NCBI Gene Symbol: LOC103319703 |
Gene Aliases | |
Gene description & Other designations | Description: putative L-ascorbate peroxidase 6 Other designations: putative L-ascorbate peroxidase 6 |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: minus Exon count: 10 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 6120993 ...... 6124689 |
CDS Sequence | 103319703 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Penta Repeat sequence: (AGATT)2 |
Repeat start & end within CDS | Repeat start: 670 Repeat end: 679 |
Forward primer | Primer sequence: CTGGTGTGCTTCGTTTGGTG Tm(°C): 59.971 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: CCTCAGAGCAAAGGCATCCA Tm(°C): 60.035 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 412 End: 740 Product size (bp): 329 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319703 NCBI Gene Symbol: LOC103319703 |
Gene Aliases | |
Gene description & Other designations | Description: putative L-ascorbate peroxidase 6 Other designations: putative L-ascorbate peroxidase 6 |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: minus Exon count: 10 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 6120993 ...... 6124689 |
CDS Sequence | 103319703 |
| Marker Information | |
Marker Type | PGTM |
Repeat type & sequence | Repeat type: Repeat sequence: |
Repeat start & end within CDS | Repeat start: Repeat end: |
Forward primer | Primer sequence: GGCGCACAAACCCATTTCTT Tm(°C): 59.967 GC (%): 50 Size: 20 |
Reverse primer | Primer sequence: CACCAAACGAAGCACACCAG Tm(°C): 59.971 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 40 End: 431 Product size (bp): 392 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319803 NCBI Gene Symbol: LOC103319803 |
Gene Aliases | |
Gene description & Other designations | Description: probable L-ascorbate peroxidase 6; chloroplastic Other designations: probable L-ascorbate peroxidase 6; chloroplastic |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 11 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 7060489 ...... 7063747 |
CDS Sequence | 103319803 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Tri Repeat sequence: (CGC)3 |
Repeat start & end within CDS | Repeat start: 24 Repeat end: 32 |
Forward primer | Primer sequence: ATGGCCTCCGTCGCTTTC Tm(°C): 60.125 GC (%): 61.111 Size: 18 |
Reverse primer | Primer sequence: TTGAGGAAGAGGCGGGAAAC Tm(°C): 59.964 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 0 End: 157 Product size (bp): 158 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319803 NCBI Gene Symbol: LOC103319803 |
Gene Aliases | |
Gene description & Other designations | Description: probable L-ascorbate peroxidase 6; chloroplastic Other designations: probable L-ascorbate peroxidase 6; chloroplastic |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 11 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 7060489 ...... 7063747 |
CDS Sequence | 103319803 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Compound Repeat sequence: (TC)4ttcctca(TCC)3 |
Repeat start & end within CDS | Repeat start: 85 Repeat end: 108 |
Forward primer | Primer sequence: TCCCGCCTCGGCTAAACTAT Tm(°C): 60.758 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: TTGAGGAAGAGGCGGGAAAC Tm(°C): 59.964 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 65 End: 157 Product size (bp): 93 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319803 NCBI Gene Symbol: LOC103319803 |
Gene Aliases | |
Gene description & Other designations | Description: probable L-ascorbate peroxidase 6; chloroplastic Other designations: probable L-ascorbate peroxidase 6; chloroplastic |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 11 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 7060489 ...... 7063747 |
CDS Sequence | 103319803 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Tri Repeat sequence: (GCC)3 |
Repeat start & end within CDS | Repeat start: 208 Repeat end: 216 |
Forward primer | Primer sequence: TTTCCCGCCTCTTCCTCAAC Tm(°C): 59.964 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: CCATCCCAACCGAACCAGAA Tm(°C): 59.962 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 139 End: 326 Product size (bp): 188 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319803 NCBI Gene Symbol: LOC103319803 |
Gene Aliases | |
Gene description & Other designations | Description: probable L-ascorbate peroxidase 6; chloroplastic Other designations: probable L-ascorbate peroxidase 6; chloroplastic |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 11 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 7060489 ...... 7063747 |
CDS Sequence | 103319803 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Di Repeat sequence: (AG)4 |
Repeat start & end within CDS | Repeat start: 1109 Repeat end: 1116 |
Forward primer | Primer sequence: TGCTGAAGACCAAGAAGCGT Tm(°C): 59.893 GC (%): 50 Size: 20 |
Reverse primer | Primer sequence: TTATCCGGGCTTCCACCAAC Tm(°C): 60.035 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 947 End: 1180 Product size (bp): 234 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103319803 NCBI Gene Symbol: LOC103319803 |
Gene Aliases | |
Gene description & Other designations | Description: probable L-ascorbate peroxidase 6; chloroplastic Other designations: probable L-ascorbate peroxidase 6; chloroplastic |
Chromosome, Strand & Exon count | Chromosome: LG2 Strand: plus Exon count: 11 |
Gene Location within genomic sequence | Genomic accession No. NC_024127.1 Gene Start and end within genomic accession: 7060489 ...... 7063747 |
CDS Sequence | 103319803 |
| Marker Information | |
Marker Type | PGTM |
Repeat type & sequence | Repeat type: Repeat sequence: |
Repeat start & end within CDS | Repeat start: Repeat end: |
Forward primer | Primer sequence: GGAGGACAGTCTTGGACAGC Tm(°C): 60.037 GC (%): 60 Size: 20 |
Reverse primer | Primer sequence: TTATCCGGGCTTCCACCAAC Tm(°C): 60.035 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 798 End: 1180 Product size (bp): 383 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103324634 NCBI Gene Symbol: LOC103324634 |
Gene Aliases | |
Gene description & Other designations | Description: L-ascorbate peroxidase; cytosolic Other designations: L-ascorbate peroxidase; cytosolic |
Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 10 |
Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 5934817 ...... 5937747 |
CDS Sequence | 103324634 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Di Repeat sequence: (CT)4 |
Repeat start & end within CDS | Repeat start: 473 Repeat end: 480 |
Forward primer | Primer sequence: CTCTTGGAGCCCATCAAGCA Tm(°C): 60.035 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: ATAAGGGGGTTGGGAGTCCA Tm(°C): 59.878 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 237 End: 553 Product size (bp): 317 |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103324634 NCBI Gene Symbol: LOC103324634 |
Gene Aliases | |
Gene description & Other designations | Description: L-ascorbate peroxidase; cytosolic Other designations: L-ascorbate peroxidase; cytosolic |
Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 10 |
Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 5934817 ...... 5937747 |
CDS Sequence | 103324634 |
| Marker Information | |
Marker Type | PMTM |
Repeat type & sequence | Repeat type: Penta Repeat sequence: (CTACC)2 |
Repeat start & end within CDS | Repeat start: 12 Repeat end: 21 |
Forward primer | Primer sequence: None Tm(°C): GC (%): Size: |
Reverse primer | Primer sequence: None Tm(°C): GC (%): Size: |
Primer start, end within sequence and product size | Start: End: Product size (bp): |
JBrowse View | JBrowse |
|
| Gene Information | |
NCBI Gene Accession Number & Symbol | Accession Number: 103324634 NCBI Gene Symbol: LOC103324634 |
Gene Aliases | |
Gene description & Other designations | Description: L-ascorbate peroxidase; cytosolic Other designations: L-ascorbate peroxidase; cytosolic |
Chromosome, Strand & Exon count | Chromosome: LG1 Strand: minus Exon count: 10 |
Gene Location within genomic sequence | Genomic accession No. NC_024126.1 Gene Start and end within genomic accession: 5934817 ...... 5937747 |
CDS Sequence | 103324634 |
| Marker Information | |
Marker Type | PGTM |
Repeat type & sequence | Repeat type: Repeat sequence: |
Repeat start & end within CDS | Repeat start: Repeat end: |
Forward primer | Primer sequence: CTCTTGGAGCCCATCAAGCA Tm(°C): 60.035 GC (%): 55 Size: 20 |
Reverse primer | Primer sequence: CAAAAGGGCGGTGTCAGTTG Tm(°C): 59.969 GC (%): 55 Size: 20 |
Primer start, end within sequence and product size | Start: 237 End: 635 Product size (bp): 399 |
JBrowse View | JBrowse |